Non-Coding RNA Search

Ss1.1-rnmm11c_b12.5

Sequence:


               
               GGAGTGAAGCCACCAGAGGGGAGAGATTCAGTCCCAGTGACTACAGAGGAGACAGTGCTG
TCCGCTGCCAAGATGAAGCTGCTGCTCTTGCTGTGTCTGGGGCTGACTCTAGCCTCTTCC
CACAAGGAAGCAGGCCAAGATGTTGTGACAAGCAACTTCGATGCTTCAAAGATTGCCGGC
GAGTGGTATTCCATTCTTTTGGCCTCAGACGCCAAGGAAAATATAGAAGAAAATGGTAGC
ATGAGAGTTTTTGTGGAGCATATCCGTGTCTTGGACAACTCTTCCCTAGCCTTTAAATTT
CAGAGAAAGGTAAACGGAGAGTGTACTGACTTTTATGCGGTTTGTGACAAAGTAGGAGAT
GGTGTGTATACAGTTGCCTACTATGGAGAGAACAAATTTCGCCTACTTGAAGTGAACTAT
TCTGACTATGTCATTTTACACCTTGTGAATGTCAATGGCGACAAAACATTCCAGCTGATG
GAGTTCTATGGCCGAAAACCAGATGTGGAGCCAAAACTCAAGGACAAGTTTGTGGAGATT
TGCCAACAATATGGCATCATCAAGGAAAACATAATCGATCTGACCAAAATTGATCGCTGC
TTCCAACTCCGAGGGAGTGGAGGAGTCCAGGAGTCCAGTGCTGAGTGAAGGCCTCCTCAT
GTGGGCTCCAGGATCTTCTCCTCCTTGGTCCCCCCATCATCTGGTGACAAGTCCTGTGAT
CCAGTTTCCATCCCGAGCCCACAGAAAGCCTGAAAGGCATTATCTCTGCCTCTTCAGGAT
CTTCCCTAATTATCTAGGAAGATTCATCAGCTCACCAAGAATCAAAAGTGTTCTCCAAAT
TCCTGACTCCCTCCGCCAGACCCAGGACAGGGCCACCATGAGGAGAACCTCCTCTACCAG
GTCAATAAATGATTCTCCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTGAAGCCACCAGAGGGGAGAGATTCAGTCCCAGTGACTACAGAGGAGACAGTGCTG
TCCGCTGCCAAGATGAAGCTGCTGCTCTTGCTGTGTCTGGGGCTGACTCTAGCCTCTTCC
CACAAGGAAGCAGGCCAAGATGTTGTGACAAGCAACTTCGATGCTTCAAAGATTGCCGGC
GAGTGGTATTCCATTCTTTTGGCCTCAGACGCCAAGGAAAATATAGAAGAAAATGGTAGC
ATGAGAGTTTTTGTGGAGCATATCCGTGTCTTGGACAACTCTTCCCTAGCCTTTAAATTT
CAGAGAAAGGTAAACGGAGAGTGTACTGACTTTTATGCGGTTTGTGACAAAGTAGGAGAT
GGTGTGTATACAGTTGCCTACTATGGAGAGAACAAATTTCGCCTACTTGAAGTGAACTAT
TCTGACTATGTCATTTTACACCTTGTGAATGTCAATGGCGACAAAACATTCCAGCTGATG
GAGTTCTATGGCCGAAAACCAGATGTGGAGCCAAAACTCAAGGACAAGTTTGTGGAGATT
TGCCAACAATATGGCATCATCAAGGAAAACATAATCGATCTGACCAAAATTGATCGCTGC
TTCCAACTCCGAGGGAGTGGAGGAGTCCAGGAGTCCAGTGCTGAGTGAAGGCCTCCTCAT
GTGGGCTCCAGGATCTTCTCCTCCTTGGTCCCCCCATCATCTGGTGACAAGTCCTGTGAT
CCAGTTTCCATCCCGAGCCCACAGAAAGCCTGAAAGGCATTATCTCTGCCTCTTCAGGAT
CTTCCCTAATTATCTAGGAAGATTCATCAGCTCACCAAGAATCAAAAGTGTTCTCCAAAT
TCCTGACTCCCTCCGCCAGACCCAGGACAGGGCCACCATGAGGAGAACCTCCTCTACCAG
GTCAATAAATGATTCTCCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|21465464|pdb|1GM6|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21465464|pdb|1GM6|A

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               170-309, gnl|bosTau2|chr8 (53333349-53333488)
               

               
               170-309, gnl|Hg17|chr9 (112803651-112803512)
               

               
               170-309, gnl|Mm7|chr4 (60001563-60001427)
               


               
               639-923, gnl|bosTau2|chr8 (53337696-53337972)
               

               
               639-923, gnl|canFam2|chr11 (70408660-70408997)
               

               
               639-923, gnl|dasNov1|scaffold_4696 (46813-46486)
               

               
               639-923, gnl|echTel1|scaffold_27461 (744-1040)
               

               
               639-923, gnl|hg17|chr9 (112799468-112799794)
               

               
               639-923, gnl|Hg17|chr9 (112799882-112799556)
               

               
               639-923, gnl|mm7|chr4 (59998112-59998411)
               

               
               639-923, gnl|Mm7|chr4 (59998457-59998199)
               

               
               639-923, gnl|oryCun1|scaffold_90455 (4549-4258)
               

               
               639-923, gnl|panTro1|chr11 (97321855-97322181)
               

               
               639-923, gnl|rheMac2|chr15 (23161483-23161146)
               

               
               639-923, gnl|rn3|chr5 (78093915-78094214)
               

               
               639-923, gnl|tetNig1|chrUn_random (145267014-145266720)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-309, gnl|bosTau2|chr8 (53333349-53333488)
               

               
               170-309, gnl|Hg17|chr9 (112803651-112803512)
               

               
               170-309, gnl|Mm7|chr4 (60001563-60001427)
               


               
               639-923, gnl|bosTau2|chr8 (53337696-53337972)
               

               
               639-923, gnl|canFam2|chr11 (70408660-70408997)
               

               
               639-923, gnl|dasNov1|scaffold_4696 (46813-46486)
               

               
               639-923, gnl|echTel1|scaffold_27461 (744-1040)
               

               
               639-923, gnl|hg17|chr9 (112799468-112799794)
               

               
               639-923, gnl|Hg17|chr9 (112799882-112799556)
               

               
               639-923, gnl|mm7|chr4 (59998112-59998411)
               

               
               639-923, gnl|Mm7|chr4 (59998457-59998199)
               

               
               639-923, gnl|oryCun1|scaffold_90455 (4549-4258)
               

               
               639-923, gnl|panTro1|chr11 (97321855-97322181)
               

               
               639-923, gnl|rheMac2|chr15 (23161483-23161146)
               

               
               639-923, gnl|rn3|chr5 (78093915-78094214)
               

               
               639-923, gnl|tetNig1|chrUn_random (145267014-145266720)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               pty (26.8303)
               

               
               nmm (12.6162)
               

               
               lyg (3.19446)
               

               
               cmu (1.30475)
               

               
               fli (0.405762)
               

               
               gul (0.355177)
               

               
               med (0.232504)
               

               
               nep (0.183925)
               

               
               nca (0.136874)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (26.8303)
               

               
               nmm (12.6162)
               

               
               lyg (3.19446)
               

               
               cmu (1.30475)
               

               
               fli (0.405762)
               

               
               gul (0.355177)
               

               
               med (0.232504)
               

               
               nep (0.183925)
               

               
               nca (0.136874)
               

               
               jca (0.11396)

	170-309, gnl\|bosTau2\|chr8 (53333349-53333488)
	170-309, gnl\|Hg17\|chr9 (112803651-112803512)
	170-309, gnl\|Mm7\|chr4 (60001563-60001427)

	639-923, gnl\|bosTau2\|chr8 (53337696-53337972)
	639-923, gnl\|canFam2\|chr11 (70408660-70408997)
	639-923, gnl\|dasNov1\|scaffold_4696 (46813-46486)
	639-923, gnl\|echTel1\|scaffold_27461 (744-1040)
	639-923, gnl\|hg17\|chr9 (112799468-112799794)
	639-923, gnl\|Hg17\|chr9 (112799882-112799556)
	639-923, gnl\|mm7\|chr4 (59998112-59998411)
	639-923, gnl\|Mm7\|chr4 (59998457-59998199)
	639-923, gnl\|oryCun1\|scaffold_90455 (4549-4258)
	639-923, gnl\|panTro1\|chr11 (97321855-97322181)
	639-923, gnl\|rheMac2\|chr15 (23161483-23161146)
	639-923, gnl\|rn3\|chr5 (78093915-78094214)
	639-923, gnl\|tetNig1\|chrUn_random (145267014-145266720)

	pty (26.8303)
	nmm (12.6162)
	lyg (3.19446)
	cmu (1.30475)
	fli (0.405762)
	gul (0.355177)
	med (0.232504)
	nep (0.183925)
	nca (0.136874)
	jca (0.11396)