Non-Coding RNA Search

Ss1.1-rnmm11c_m13.5

Sequence:


               
               GATGGCTGGAGATATCGGGTAGTGATGGCATATCTCTGAAACTCTACATTTTAAAGGGGA
CTAAATAAGACTTGTATGTAATCCCCCTCTCTCTTGCCTAACAGTAAGAGATGGAAAATA
GAGGTGCCCTAACAAATATTAACTCAAAGGATCATAAAATTAAAAAGAAAAAATTTTTCT
CTAAGTAGTAGAGAGTATTTCTATAGGAAAAATATATATATATATATTTTTCGTGATTAT
TTTGTAATGTGGTGGCTTGAAAAGATGTCATTGTTTTAACCTAGGAGAAGATCAAATATT
TCTTACAAAATATTTTGCAGGAAAATCATTACCATGAGAATTGCAGTGATAGCCTTCTGC
CTCTGGGGCTTCGCCTCTGCCCTTCCAGTGAGTACAGCTGAATCTTAAACAGAATTCCCC
CAAATAAATGAATTGTGTGCTTCAGTGTGCCAGGAACTCATTCTCACTGTAATCTTTCTT
CCCATGTTCTATTTCAAAGGTTAAACAGACTAATTCTGGCAGCTCGGAGGAAAAGCTGGT
GAGTATCTTTAAGGTTTATCATCTGGTTAAATTGTCGATGCCACTGGTGCAAGATATACT
ACAAACATACGGCAATTTTACTTATTTCATAGTTAAACAAAATAAGTTAGAAGTATGTAT
TGAATGCCTGCTACGGTTCTAGGCCAGTACCACGCACAGGATTGCTTTTAATTACTGTCA
TCTCCTAAAACCAAACTAAATATTTTAATAGAATAAAATCTTGCTCTGGGCCATTATCAT
TTACGTAAAATGAGTTCTATGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGCTGGAGATATCGGGTAGTGATGGCATATCTCTGAAACTCTACATTTTAAAGGGGA
CTAAATAAGACTTGTATGTAATCCCCCTCTCTCTTGCCTAACAGTAAGAGATGGAAAATA
GAGGTGCCCTAACAAATATTAACTCAAAGGATCATAAAATTAAAAAGAAAAAATTTTTCT
CTAAGTAGTAGAGAGTATTTCTATAGGAAAAATATATATATATATATTTTTCGTGATTAT
TTTGTAATGTGGTGGCTTGAAAAGATGTCATTGTTTTAACCTAGGAGAAGATCAAATATT
TCTTACAAAATATTTTGCAGGAAAATCATTACCATGAGAATTGCAGTGATAGCCTTCTGC
CTCTGGGGCTTCGCCTCTGCCCTTCCAGTGAGTACAGCTGAATCTTAAACAGAATTCCCC
CAAATAAATGAATTGTGTGCTTCAGTGTGCCAGGAACTCATTCTCACTGTAATCTTTCTT
CCCATGTTCTATTTCAAAGGTTAAACAGACTAATTCTGGCAGCTCGGAGGAAAAGCTGGT
GAGTATCTTTAAGGTTTATCATCTGGTTAAATTGTCGATGCCACTGGTGCAAGATATACT
ACAAACATACGGCAATTTTACTTATTTCATAGTTAAACAAAATAAGTTAGAAGTATGTAT
TGAATGCCTGCTACGGTTCTAGGCCAGTACCACGCACAGGATTGCTTTTAATTACTGTCA
TCTCCTAAAACCAAACTAAATATTTTAATAGAATAAAATCTTGCTCTGGGCCATTATCAT
TTACGTAAAATGAGTTCTATGAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|164600|gb|AAA31094.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|164600|gb|AAA31094.1|

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-803, gnl|bosTau2|chr6 (15315325-15316099)
               

               
               1-803, gnl|canFam2|chr32 (14315074-14315954)
               

               
               1-803, gnl|hg17|chr4 (89254653-89255524)
               

               
               1-803, gnl|Hg17|chr4 (89254908-89255700)
               

               
               1-803, gnl|mm7|chr5 (103626221-103627060)
               

               
               1-803, gnl|Mm7|chr5 (103626489-103627222)
               

               
               1-803, gnl|monDom2|scaffold_37 (15258806-15257894)
               

               
               1-803, gnl|panTro1|chr3 (105246854-105247726)
               

               
               1-803, gnl|rheMac2|chr5 (80941840-80942710)
               

               
               1-803, gnl|rn3|chr14 (6426931-6426105)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-803, gnl|bosTau2|chr6 (15315325-15316099)
               

               
               1-803, gnl|canFam2|chr32 (14315074-14315954)
               

               
               1-803, gnl|hg17|chr4 (89254653-89255524)
               

               
               1-803, gnl|Hg17|chr4 (89254908-89255700)
               

               
               1-803, gnl|mm7|chr5 (103626221-103627060)
               

               
               1-803, gnl|Mm7|chr5 (103626489-103627222)
               

               
               1-803, gnl|monDom2|scaffold_37 (15258806-15257894)
               

               
               1-803, gnl|panTro1|chr3 (105246854-105247726)
               

               
               1-803, gnl|rheMac2|chr5 (80941840-80942710)
               

               
               1-803, gnl|rn3|chr14 (6426931-6426105)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.265604)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)

	1-803, gnl\|bosTau2\|chr6 (15315325-15316099)
	1-803, gnl\|canFam2\|chr32 (14315074-14315954)
	1-803, gnl\|hg17\|chr4 (89254653-89255524)
	1-803, gnl\|Hg17\|chr4 (89254908-89255700)
	1-803, gnl\|mm7\|chr5 (103626221-103627060)
	1-803, gnl\|Mm7\|chr5 (103626489-103627222)
	1-803, gnl\|monDom2\|scaffold_37 (15258806-15257894)
	1-803, gnl\|panTro1\|chr3 (105246854-105247726)
	1-803, gnl\|rheMac2\|chr5 (80941840-80942710)
	1-803, gnl\|rn3\|chr14 (6426931-6426105)