Ss1.1-rnmm12c_d21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCTGTGAGTTCGCGGAAGTCCTGCCAGACTCTAGCCCGGCCTAGCCCGGCCGGACCCTA CCCAGTCCCCGCCCGGCCCGCCATGGGCCCTCCGTGCCGCAGTCTCTCTGCTCTCCTGCT GCTGTTGCAGGTCTCATCGTGGCTCTGCCAAGAGCCGGAGCCCTGCAATCCTGGCTTTGG CGCCAAGAGCTACACGTTCACCGTGCCCCGGCGGCACTTGGAGAGAGGCCGAGTCCTGGG CCGAGTGAGTTTTGAAGGATGCACCGGTCTGCCAAGGACGGTCTATGTTTCTGATGACAC CCGATTCAAAGTGGGCACCGACGGTGTGGTTACAGTCAAACGGCCATTTCAGCTTCATAA CCCGGAGATTAGTTTTCTCATCCACGCCTGGGACTCCACCCGCAGGAAGCTGTCCACCAA GGTGACACTGAAGGCGGCCACACACCACCATCACCACCACCGCCATCAGGACTCTCCCTC TGGCGCCCACACAGAAGTGCTCACGTTTCCCAGCTCCCACCATGGTCTCAGAAGACAGAA AAGAGACTGGGTTATCCCTCCCATCAGCTGCCCAGAAAATGAGAAAGGCCCGTTTCCTAA GGATCTGGTTCAGATCAAATCTAACAGAGAAAAAGAAACCAAGGTTTTCTACAGCATCAC TGGTCAAGGAGCCGACACACCTCCCGTCGGTGTGTTTATGATTGAAAGAGAAACAGGGTG GCTAAAGGTGACGGAGCCTCTGGATAGAGAAGCCATTGCCAAGTACATTCTCTACTCTCA TGCCGTGTCTTCCAACGGGCAAGCCATCGAGGAGCCCATGGAGATTGTGATCACCGTGAC CGATCAGAACGACAACAAGCCCGAGTTCACCCAGGAGGTCTTCAGGGGCTCCGTCATGGA GGGCGCTCTTCCAGGGACCTCTGTGATGCAGGTCACGGCCACGGACAAAGACGACGATGT GAACACCTACAATGCTGCCATTGCTTACACCATCCTCAGCCAGGAGCCTACCCTGCCTCA CAACCAAATGTTCACCATCAACAGGGACACAGGAGTCATCAGTGTGCTCACCACTGGGCT GGACCGGGAGAGTTTTCCCACGTACACCCTGGTGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCTGTGAGTTCGCGGAAGTCCTGCCAGACTCTAGCCCGGCCTAGCCCGGCCGGACCCTA CCCAGTCCCCGCCCGGCCCGCCATGGGCCCTCCGTGCCGCAGTCTCTCTGCTCTCCTGCT GCTGTTGCAGGTCTCATCGTGGCTCTGCCAAGAGCCGGAGCCCTGCAATCCTGGCTTTGG CGCCAAGAGCTACACGTTCACCGTGCCCCGGCGGCACTTGGAGAGAGGCCGAGTCCTGGG CCGAGTGAGTTTTGAAGGATGCACCGGTCTGCCAAGGACGGTCTATGTTTCTGATGACAC CCGATTCAAAGTGGGCACCGACGGTGTGGTTACAGTCAAACGGCCATTTCAGCTTCATAA CCCGGAGATTAGTTTTCTCATCCACGCCTGGGACTCCACCCGCAGGAAGCTGTCCACCAA GGTGACACTGAAGGCGGCCACACACCACCATCACCACCACCGCCATCAGGACTCTCCCTC TGGCGCCCACACAGAAGTGCTCACGTTTCCCAGCTCCCACCATGGTCTCAGAAGACAGAA AAGAGACTGGGTTATCCCTCCCATCAGCTGCCCAGAAAATGAGAAAGGCCCGTTTCCTAA GGATCTGGTTCAGATCAAATCTAACAGAGAAAAAGAAACCAAGGTTTTCTACAGCATCAC TGGTCAAGGAGCCGACACACCTCCCGTCGGTGTGTTTATGATTGAAAGAGAAACAGGGTG GCTAAAGGTGACGGAGCCTCTGGATAGAGAAGCCATTGCCAAGTACATTCTCTACTCTCA TGCCGTGTCTTCCAACGGGCAAGCCATCGAGGAGCCCATGGAGATTGTGATCACCGTGAC CGATCAGAACGACAACAAGCCCGAGTTCACCCAGGAGGTCTTCAGGGGCTCCGTCATGGA GGGCGCTCTTCCAGGGACCTCTGTGATGCAGGTCACGGCCACGGACAAAGACGACGATGT GAACACCTACAATGCTGCCATTGCTTACACCATCCTCAGCCAGGAGCCTACCCTGCCTCA CAACCAAATGTTCACCATCAACAGGGACACAGGAGTCATCAGTGTGCTCACCACTGGGCT GGACCGGGAGAGTTTTCCCACGTACACCCTGGTGGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 244-468, gnl|bosTau2|chr18 (14242437-14242213) | |
| 244-468, gnl|canFam2|chr5 (83792593-83792395) | |
| 244-468, gnl|danRer3|chr7 (49954251-49954057) | |
| 244-468, gnl|dasNov1|scaffold_76849 (3687-3871) | |
| 244-468, gnl|echTel1|scaffold_324450 (20912-21110) | |
| 244-468, gnl|hg17|chr16 (67393040-67393238) | |
| 244-468, gnl|Hg17|chr16 (67393072-67393296) | |
| 244-468, gnl|loxAfr1|scaffold_7780 (17115-16917) | |
| 244-468, gnl|mm7|chr8 (105247612-105247810) | |
| 244-468, gnl|Mm7|chr8 (105247644-105247868) | |
| 244-468, gnl|monDom2|scaffold_23 (5428525-5428345) | |
| 244-468, gnl|oryCun1|scaffold_208757 (6605-6408) | |
| 244-468, gnl|panTro1|chr18 (61706891-61707089) | |
| 244-468, gnl|rheMac2|chr20 (67161737-67161935) | |
| 244-468, gnl|rn3|chr19 (36495878-36496076) | |
| 611-769, gnl|bosTau2|chr18 (14237186-14237028) | |
| 611-769, gnl|canFam2|chr5 (83787980-83787803) | |
| 611-769, gnl|danRer3|chr7 (49943112-49942933) | |
| 611-769, gnl|dasNov1|scaffold_69472 (7828-8005) | |
| 611-769, gnl|echTel1|scaffold_287341 (79898-80075) | |
| 611-769, gnl|fr1|chrUn (144351624-144351798) | |
| 611-769, gnl|galGal2|chr11_random (69555-69727) | |
| 611-769, gnl|hg17|chr16 (67400082-67400259) | |
| 611-769, gnl|Hg17|chr16 (67400094-67400252) | |
| 611-769, gnl|loxAfr1|scaffold_7780 (12536-12359) | |
| 611-769, gnl|mm7|chr8 (105252394-105252571) | |
| 611-769, gnl|Mm7|chr8 (105252406-105252564) | |
| 611-769, gnl|monDom2|scaffold_23 (5424997-5424823) | |
| 611-769, gnl|oryCun1|scaffold_208757 (1748-1587) | |
| 611-769, gnl|panTro1|chr18 (61714692-61714869) | |
| 611-769, gnl|rheMac2|chr20 (67169649-67169826) | |
| 611-769, gnl|rn3|chr19 (36500304-36500481) | |
| 611-769, gnl|tetNig1|chrUn_random (31140635-31140464) | |
| 611-769, gnl|xenTro1|scaffold_132 (1586196-1586019) | |
| 770-915, gnl|bosTau2|chr18 (14236085-14235940) | |
| 770-915, gnl|Hg17|chr16 (67401601-67401746) | |
| 770-915, gnl|Mm7|chr8 (105255469-105255614) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 244-468, gnl|bosTau2|chr18 (14242437-14242213) | |
| 244-468, gnl|canFam2|chr5 (83792593-83792395) | |
| 244-468, gnl|danRer3|chr7 (49954251-49954057) | |
| 244-468, gnl|dasNov1|scaffold_76849 (3687-3871) | |
| 244-468, gnl|echTel1|scaffold_324450 (20912-21110) | |
| 244-468, gnl|hg17|chr16 (67393040-67393238) | |
| 244-468, gnl|Hg17|chr16 (67393072-67393296) | |
| 244-468, gnl|loxAfr1|scaffold_7780 (17115-16917) | |
| 244-468, gnl|mm7|chr8 (105247612-105247810) | |
| 244-468, gnl|Mm7|chr8 (105247644-105247868) | |
| 244-468, gnl|monDom2|scaffold_23 (5428525-5428345) | |
| 244-468, gnl|oryCun1|scaffold_208757 (6605-6408) | |
| 244-468, gnl|panTro1|chr18 (61706891-61707089) | |
| 244-468, gnl|rheMac2|chr20 (67161737-67161935) | |
| 244-468, gnl|rn3|chr19 (36495878-36496076) | |
| 611-769, gnl|bosTau2|chr18 (14237186-14237028) | |
| 611-769, gnl|canFam2|chr5 (83787980-83787803) | |
| 611-769, gnl|danRer3|chr7 (49943112-49942933) | |
| 611-769, gnl|dasNov1|scaffold_69472 (7828-8005) | |
| 611-769, gnl|echTel1|scaffold_287341 (79898-80075) | |
| 611-769, gnl|fr1|chrUn (144351624-144351798) | |
| 611-769, gnl|galGal2|chr11_random (69555-69727) | |
| 611-769, gnl|hg17|chr16 (67400082-67400259) | |
| 611-769, gnl|Hg17|chr16 (67400094-67400252) | |
| 611-769, gnl|loxAfr1|scaffold_7780 (12536-12359) | |
| 611-769, gnl|mm7|chr8 (105252394-105252571) | |
| 611-769, gnl|Mm7|chr8 (105252406-105252564) | |
| 611-769, gnl|monDom2|scaffold_23 (5424997-5424823) | |
| 611-769, gnl|oryCun1|scaffold_208757 (1748-1587) | |
| 611-769, gnl|panTro1|chr18 (61714692-61714869) | |
| 611-769, gnl|rheMac2|chr20 (67169649-67169826) | |
| 611-769, gnl|rn3|chr19 (36500304-36500481) | |
| 611-769, gnl|tetNig1|chrUn_random (31140635-31140464) | |
| 611-769, gnl|xenTro1|scaffold_132 (1586196-1586019) | |
| 770-915, gnl|bosTau2|chr18 (14236085-14235940) | |
| 770-915, gnl|Hg17|chr16 (67401601-67401746) | |
| 770-915, gnl|Mm7|chr8 (105255469-105255614) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| nep (0.183925) | |
| nmm (0.132802) |