Non-Coding RNA Search

Ss1.1-rnmm13c_d8.5.5

Sequence:


               
               TTGAAGGGGATAATGAAAGATTGCAACATATGGAAGGCTTTATCAAGATGTGATGTTTCA
GTCATCATAATGAATGTCAAATCATTGTTTTAAGGTATAAAACCTTTATAGCTATTTTAA
ATATGTGAAAGCTTTTTTACAAAAATTTAAAGAGATTCTGTACCAAGGGAAACAAACAGT
CACATTGCAGAGATCTGATTACAAGGTTTTTCTTTTAAAGAAACCTGCAAATGTCTAGAT
ATATGAAGCTTTTGAAAAAGCATAAATAAACTGAATAACTAGGTGACATCATTTAACACG
TGAAAAGTCCTTTAGTGTGTAGGACTTATGTATGATTGTCATTGTGCTACAGACCAGATT
TTGGATGTTTGATGTGCATGTGAACTCATCCATAGTTGTACATAGGGAAATATGTAGCCT
TAGTTCAGTAACATTTATGTATGTGAAGATATCACACATTAAGTTTCAGCAATGACTCCT
GTTATTAACAGAATGTTAATTTAAGTGTAATATTCTTTAAAAATTATAATGTATCTTTTT
CTCTTATTCCCTGACATTAATTCCCTAATCCTTCAGAAGAAGCTAAAAGTGTTTTTGTAA
AATTTTCCACTCTCATGGTTAGCCAAATTTTACATTAAGGATACATTTATGTATAGGAAA
AACCTAAGTTCATTTTTGAAAACACCCTACACAATAAAAAACATAATGCTGTGTAAGGAA
ATATCTTACTGTTGATGTTTTAGCAGGTTTCAGCGCTATCTGCATTTGTATTTTGTATGA
GAGTCCTAAATGTTATCCACTACCTTTTTCTTCCTAGTAGAAACAACATGACATAGAAGT
TAGTGTGGACTCTGGACCGCTACTGCCCAGGCTAAGTTTCTAGCATAGGGCATGCATTTA
ACCTCTGTGCCTCAGTTTCCTTTTCTATAAAAGGGAAGTGACAATAACAATATGTTAGGA
TTGCTGTGAGGTGTAAATGAGTTATTATTTTTAAAGCACTTAGAATAGTATTTGAGACAC
AGGAAGAGCTATATGTTAGATACTATCATAATTTGTATTTCTTGAATTATGCTGCAAAAA
AAATTAAAAGCTTTGCTACCAATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAAGGGGATAATGAAAGATTGCAACATATGGAAGGCTTTATCAAGATGTGATGTTTCA
GTCATCATAATGAATGTCAAATCATTGTTTTAAGGTATAAAACCTTTATAGCTATTTTAA
ATATGTGAAAGCTTTTTTACAAAAATTTAAAGAGATTCTGTACCAAGGGAAACAAACAGT
CACATTGCAGAGATCTGATTACAAGGTTTTTCTTTTAAAGAAACCTGCAAATGTCTAGAT
ATATGAAGCTTTTGAAAAAGCATAAATAAACTGAATAACTAGGTGACATCATTTAACACG
TGAAAAGTCCTTTAGTGTGTAGGACTTATGTATGATTGTCATTGTGCTACAGACCAGATT
TTGGATGTTTGATGTGCATGTGAACTCATCCATAGTTGTACATAGGGAAATATGTAGCCT
TAGTTCAGTAACATTTATGTATGTGAAGATATCACACATTAAGTTTCAGCAATGACTCCT
GTTATTAACAGAATGTTAATTTAAGTGTAATATTCTTTAAAAATTATAATGTATCTTTTT
CTCTTATTCCCTGACATTAATTCCCTAATCCTTCAGAAGAAGCTAAAAGTGTTTTTGTAA
AATTTTCCACTCTCATGGTTAGCCAAATTTTACATTAAGGATACATTTATGTATAGGAAA
AACCTAAGTTCATTTTTGAAAACACCCTACACAATAAAAAACATAATGCTGTGTAAGGAA
ATATCTTACTGTTGATGTTTTAGCAGGTTTCAGCGCTATCTGCATTTGTATTTTGTATGA
GAGTCCTAAATGTTATCCACTACCTTTTTCTTCCTAGTAGAAACAACATGACATAGAAGT
TAGTGTGGACTCTGGACCGCTACTGCCCAGGCTAAGTTTCTAGCATAGGGCATGCATTTA
ACCTCTGTGCCTCAGTTTCCTTTTCTATAAAAGGGAAGTGACAATAACAATATGTTAGGA
TTGCTGTGAGGTGTAAATGAGTTATTATTTTTAAAGCACTTAGAATAGTATTTGAGACAC
AGGAAGAGCTATATGTTAGATACTATCATAATTTGTATTTCTTGAATTATGCTGCAAAAA
AAATTAAAAGCTTTGCTACCAATAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               680-1098, gnl|bosTau2|chr1 (57910740-57911170)
               

               
               680-1098, gnl|Hg17|chr10 (38279935-38279492)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               680-1098, gnl|bosTau2|chr1 (57910740-57911170)
               

               
               680-1098, gnl|Hg17|chr10 (38279935-38279492)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               mgp (0.230681)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               mgp (0.230681)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)

	680-1098, gnl\|bosTau2\|chr1 (57910740-57911170)
	680-1098, gnl\|Hg17\|chr10 (38279935-38279492)

	bfe (0.299715)
	cte (0.29274)
	mgp (0.230681)
	fty (0.17584)
	fhi (0.169578)
	nmm (0.132802)
	kid (0.129735)
	jej (0.0989218)