Non-Coding RNA Search

Ss1.1-rnmm14c_n4.5

Sequence:


               
               AAAAAAAAAAAAAACAATTAGCAACATCTTTTAAAATATTACACTACAGTTACCAAAACA
CTGACCAAGTTTTGGGCACTCCAAGAAGGTATGAGTTTGGGTTTCATTGGAGAGCTTGTT
TTCAACATTACTTTGCTCCTGTTTGAACAGTAGGGAGAGAATACAGATCCTGCCATTTAA
TGGTCCTTCCTGTTGCAAGTTGGGGCTTTAAGCTTTCAAGGTACAGAAGTATGTCTTTTA
AAATGAGAGTAACATTTGTTTAGCTAGTGAATGTGACAATATTTTTTATGTATATAATGA
GTCTAATGTAATTTTAATCAGCTGGGTAATGATGTTATTAAATGGCAAAACAAATGCAGT
GTATTAGCAGCTAAGCACTGCAAGGCAAAATCCAGACACTGGCAGGCTCCTGATTCAGAT
AATGTGGACACTTAGAAATAAATGTATATAAACATGTAGCTGGGGATCTGAATTCCAATT
TTAAACCATGATTCTATGACTTGTAATAAACCAAGCTGTACAATTTAGTTGATGATAGCA
GCCTCTGAGCTGCTCCAAAATATATATATCAACAGTGGTAAATACTGTAGAATTATATAT
ATATATACACACACACACACATATATATATATATGCAAAATATATATATACACACACTAT
TTTCTTAATGTCATCTGACATTTTTTATCTGTACACTTTTTTTGATGTGATTGTTTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAACAATTAGCAACATCTTTTAAAATATTACACTACAGTTACCAAAACA
CTGACCAAGTTTTGGGCACTCCAAGAAGGTATGAGTTTGGGTTTCATTGGAGAGCTTGTT
TTCAACATTACTTTGCTCCTGTTTGAACAGTAGGGAGAGAATACAGATCCTGCCATTTAA
TGGTCCTTCCTGTTGCAAGTTGGGGCTTTAAGCTTTCAAGGTACAGAAGTATGTCTTTTA
AAATGAGAGTAACATTTGTTTAGCTAGTGAATGTGACAATATTTTTTATGTATATAATGA
GTCTAATGTAATTTTAATCAGCTGGGTAATGATGTTATTAAATGGCAAAACAAATGCAGT
GTATTAGCAGCTAAGCACTGCAAGGCAAAATCCAGACACTGGCAGGCTCCTGATTCAGAT
AATGTGGACACTTAGAAATAAATGTATATAAACATGTAGCTGGGGATCTGAATTCCAATT
TTAAACCATGATTCTATGACTTGTAATAAACCAAGCTGTACAATTTAGTTGATGATAGCA
GCCTCTGAGCTGCTCCAAAATATATATATCAACAGTGGTAAATACTGTAGAATTATATAT
ATATATACACACACACACACATATATATATATATGCAAAATATATATATACACACACTAT
TTTCTTAATGTCATCTGACATTTTTTATCTGTACACTTTTTTTGATGTGATTGTTTTTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               510-607, + strand, RNAz p=0.999103

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               510-607, + strand, RNAz p=0.999103

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               510-591, CR736721 Homo sapiens library (Ebert L) Homo sapiens cDNA clone 
(emb|CR736721.1|), blast E-value=5e-28, identity=95.12% 
               

               
               510-591, xr32c07.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone IMAGE (gb|AW418528.1|), 
blast E-value=5e-28, identity=95.12% 
               

               
               510-591, by01c01.x1 Human Lens cDNA (Un-normalized, unamplified) 
(gb|BF726110.1|), blast E-value=5e-28, identity=95.12% 
               

               
               510-591, 603180589F1 NIH_MGC_121 Homo sapiens cDNA clone IMAGE (gb|BI913997.1|), 
blast E-value=5e-28, identity=95.12% 
               

               
               510-591, AGENCOURT_6433412 NIH_MGC_92 Homo sapiens cDNA clone IMAGE 
(gb|BM463240.1|), blast E-value=5e-28, identity=95.12% 
               

               
               510-591, UI-CF-DU1-aaq-g-21-0-UI.s1 UI-CF-DU1 Homo sapiens cDNA clone 
(gb|BM968512.1|), blast E-value=5e-28, identity=95.12%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               510-591, CR736721 Homo sapiens library (Ebert L) Homo sapiens cDNA clone 
(emb|CR736721.1|), blast E-value=5e-28, identity=95.12% 
               

               
               510-591, xr32c07.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone IMAGE (gb|AW418528.1|), 
blast E-value=5e-28, identity=95.12% 
               

               
               510-591, by01c01.x1 Human Lens cDNA (Un-normalized, unamplified) 
(gb|BF726110.1|), blast E-value=5e-28, identity=95.12% 
               

               
               510-591, 603180589F1 NIH_MGC_121 Homo sapiens cDNA clone IMAGE (gb|BI913997.1|), 
blast E-value=5e-28, identity=95.12% 
               

               
               510-591, AGENCOURT_6433412 NIH_MGC_92 Homo sapiens cDNA clone IMAGE 
(gb|BM463240.1|), blast E-value=5e-28, identity=95.12% 
               

               
               510-591, UI-CF-DU1-aaq-g-21-0-UI.s1 UI-CF-DU1 Homo sapiens cDNA clone 
(gb|BM968512.1|), blast E-value=5e-28, identity=95.12%

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               6-607, gnl|bosTau2|chr13 (5537579-5538190)
               

               
               6-607, gnl|Hg17|chr10 (11543248-11542631)
               

               
               6-607, gnl|Mm7|chr2 (6360073-6360659)
               


               
               621-720, gnl|bosTau2|chr13 (5538178-5538276)
               

               
               621-720, gnl|Hg17|chr10 (11542643-11542537)
               

               
               621-720, gnl|Mm7|chr2 (6360647-6360748)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-607, gnl|bosTau2|chr13 (5537579-5538190)
               

               
               6-607, gnl|Hg17|chr10 (11543248-11542631)
               

               
               6-607, gnl|Mm7|chr2 (6360073-6360659)
               


               
               621-720, gnl|bosTau2|chr13 (5538178-5538276)
               

               
               621-720, gnl|Hg17|chr10 (11542643-11542537)
               

               
               621-720, gnl|Mm7|chr2 (6360647-6360748)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	510-591, CR736721 Homo sapiens library (Ebert L) Homo sapiens cDNA clone (emb\|CR736721.1\|), blast E-value=5e-28, identity=95.12%
	510-591, xr32c07.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone IMAGE (gb\|AW418528.1\|), blast E-value=5e-28, identity=95.12%
	510-591, by01c01.x1 Human Lens cDNA (Un-normalized, unamplified) (gb\|BF726110.1\|), blast E-value=5e-28, identity=95.12%
	510-591, 603180589F1 NIH_MGC_121 Homo sapiens cDNA clone IMAGE (gb\|BI913997.1\|), blast E-value=5e-28, identity=95.12%
	510-591, AGENCOURT_6433412 NIH_MGC_92 Homo sapiens cDNA clone IMAGE (gb\|BM463240.1\|), blast E-value=5e-28, identity=95.12%
	510-591, UI-CF-DU1-aaq-g-21-0-UI.s1 UI-CF-DU1 Homo sapiens cDNA clone (gb\|BM968512.1\|), blast E-value=5e-28, identity=95.12%

	6-607, gnl\|bosTau2\|chr13 (5537579-5538190)
	6-607, gnl\|Hg17\|chr10 (11543248-11542631)
	6-607, gnl\|Mm7\|chr2 (6360073-6360659)

	621-720, gnl\|bosTau2\|chr13 (5538178-5538276)
	621-720, gnl\|Hg17\|chr10 (11542643-11542537)
	621-720, gnl\|Mm7\|chr2 (6360647-6360748)

	ece (0.229305)
	tes (0.207814)
	nje (0.16592)
	spl (0.143184)
	nmm (0.132802)
	thg (0.126791)
	ebs (0.118301)
	spc (0.113366)