Ss1.1-rnmm14c_o19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATAATTCCTCCTAAAGATAAGGATCACTGGCTTCTATGCTCATCTTCTTTTCTCTCATC ATGGTGTTTTTTCCCAACTATGTTTTCTTACATAAATTAGGTTTCAAAGCTTGATTTTTT TGGGTTTAGATCTGTGAAGCAGTTTTCTGATTAAAATTAATTCATCTAATACCCTTTTAT GAGGTTTTACTAGAAAGTCATTACATGGTCATTTTTCTTACCCCAGGCCTGTAAAAATGA CCTATAAGTTTATTCATGTACAATTGGTTTGCTTGAGTTTCTTAACGAAAAAGATAGACT GTGAGAGTCAACTCAACATGGCAAAACCATTTTTGAGATGGTGACATAACAGGTAGTGGA AATAATTAACGAATTCCATAAAAAAAAAGAAAGTGGGGTAGAGTATTTGCTCTAGGTATC ACTGGATTAGAAAGAGTTTGACATTAGCTGAAACTGTTTTCAGTTGTTTGGAGGATTAAG AGATTCTACTTTTATCATGAAGGAACTAGTGGTAAAACATCCAAGAGCACTAGGTTTGTC ATATAGAATTTTGAGGTTTGGTGGATCCACCCCTTACCTTTCCATGGTGAGTTATCACCA ACAAATTCCATATATTTGGATATTATGCCAGCCGTATAATCAAATTTATATCATTGGGGG ATGTGTTTTTACTATAAAAGAAATGAAAAAGACAAGATTTATGAGATAAATATTTGAAGA CAGTGTACTCTTGCCAGCTGTTATCAGTTGGTATTTCTTCTACAAGTCCAGAATACTTTA AAACCTGATTTGCTAGACCTCAGAACTTTCAACATGGTCTAATTACTTACTCAAAGACAT AGATGTCAAAATTTTAGGCAACCTTCTAAACCTTTTTCACCATGGATCAAACTATGACTT AAAGAATAACACACATAGATGGATTAATTGGAAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATAATTCCTCCTAAAGATAAGGATCACTGGCTTCTATGCTCATCTTCTTTTCTCTCATC ATGGTGTTTTTTCCCAACTATGTTTTCTTACATAAATTAGGTTTCAAAGCTTGATTTTTT TGGGTTTAGATCTGTGAAGCAGTTTTCTGATTAAAATTAATTCATCTAATACCCTTTTAT GAGGTTTTACTAGAAAGTCATTACATGGTCATTTTTCTTACCCCAGGCCTGTAAAAATGA CCTATAAGTTTATTCATGTACAATTGGTTTGCTTGAGTTTCTTAACGAAAAAGATAGACT GTGAGAGTCAACTCAACATGGCAAAACCATTTTTGAGATGGTGACATAACAGGTAGTGGA AATAATTAACGAATTCCATAAAAAAAAAGAAAGTGGGGTAGAGTATTTGCTCTAGGTATC ACTGGATTAGAAAGAGTTTGACATTAGCTGAAACTGTTTTCAGTTGTTTGGAGGATTAAG AGATTCTACTTTTATCATGAAGGAACTAGTGGTAAAACATCCAAGAGCACTAGGTTTGTC ATATAGAATTTTGAGGTTTGGTGGATCCACCCCTTACCTTTCCATGGTGAGTTATCACCA ACAAATTCCATATATTTGGATATTATGCCAGCCGTATAATCAAATTTATATCATTGGGGG ATGTGTTTTTACTATAAAAGAAATGAAAAAGACAAGATTTATGAGATAAATATTTGAAGA CAGTGTACTCTTGCCAGCTGTTATCAGTTGGTATTTCTTCTACAAGTCCAGAATACTTTA AAACCTGATTTGCTAGACCTCAGAACTTTCAACATGGTCTAATTACTTACTCAAAGACAT AGATGTCAAAATTTTAGGCAACCTTCTAAACCTTTTTCACCATGGATCAAACTATGACTT AAAGAATAACACACATAGATGGATTAATTGGAAATA |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 3-585, gnl|bosTau2|chrX (22979007-22978432) | |
| 3-585, gnl|Hg17|chrX (76568927-76568286) | |
| 3-585, gnl|Mm7|chrX (101126527-101125884) | |
| 612-936, gnl|bosTau2|chrX (22978433-22978114) | |
| 612-936, gnl|canFam2|chrX (62832792-62833432) | |
| 612-936, gnl|canFam2|chrX (62832792-62833335) | |
| 612-936, gnl|canFam2|chrX (62832792-62833259) | |
| 612-936, gnl|dasNov1|scaffold_43690 (8368-8990) | |
| 612-936, gnl|dasNov1|scaffold_43690 (8368-8890) | |
| 612-936, gnl|dasNov1|scaffold_43690 (8368-8831) | |
| 612-936, gnl|echTel1|scaffold_261496 (3235-2590) | |
| 612-936, gnl|echTel1|scaffold_261496 (3235-2732) | |
| 612-936, gnl|echTel1|scaffold_261496 (3235-2789) | |
| 612-936, gnl|galGal2|chr4 (12554529-12555190) | |
| 612-936, gnl|galGal2|chr4 (12554529-12555048) | |
| 612-936, gnl|galGal2|chr4 (12554529-12554987) | |
| 612-936, gnl|hg17|chr8 (19061198-19061800) | |
| 612-936, gnl|hg17|chrX (76567827-76568277) | |
| 612-936, gnl|Hg17|chrX (76568287-76567962) | |
| 612-936, gnl|hg17|chrX_random (772874-773384) | |
| 612-936, gnl|loxAfr1|scaffold_21371 (50786-51440) | |
| 612-936, gnl|loxAfr1|scaffold_21371 (50786-51308) | |
| 612-936, gnl|loxAfr1|scaffold_21371 (50786-51248) | |
| 612-936, gnl|mm7|chrX (101125445-101126010) | |
| 612-936, gnl|mm7|chrX (101125445-101125919) | |
| 612-936, gnl|mm7|chrX (101125445-101125875) | |
| 612-936, gnl|Mm7|chrX (101125896-101125574) | |
| 612-936, gnl|monDom2|scaffold_113 (501263-501894) | |
| 612-936, gnl|monDom2|scaffold_113 (501263-501733) | |
| 612-936, gnl|monDom2|scaffold_113 (501263-501689) | |
| 612-936, gnl|oryCun1|scaffold_193915 (5172-4565) | |
| 612-936, gnl|oryCun1|scaffold_193915 (5172-4655) | |
| 612-936, gnl|oryCun1|scaffold_210365 (4032-3573) | |
| 612-936, gnl|panTro1|chr7 (19880734-19881335) | |
| 612-936, gnl|panTro1|chrX (79062732-79063241) | |
| 612-936, gnl|panTro1|chrX (79062732-79063182) | |
| 612-936, gnl|rheMac2|chr8 (19056698-19057299) | |
| 612-936, gnl|rheMac2|chrX (76180095-76180605) | |
| 612-936, gnl|rheMac2|chrX (76180095-76180545) | |
| 612-936, gnl|rn3|chrX (93977736-93978302) | |
| 612-936, gnl|rn3|chrX (93977736-93978211) | |
| 612-936, gnl|rn3|chrX (93977736-93978167) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-585, gnl|bosTau2|chrX (22979007-22978432) | |
| 3-585, gnl|Hg17|chrX (76568927-76568286) | |
| 3-585, gnl|Mm7|chrX (101126527-101125884) | |
| 612-936, gnl|bosTau2|chrX (22978433-22978114) | |
| 612-936, gnl|canFam2|chrX (62832792-62833432) | |
| 612-936, gnl|canFam2|chrX (62832792-62833335) | |
| 612-936, gnl|canFam2|chrX (62832792-62833259) | |
| 612-936, gnl|dasNov1|scaffold_43690 (8368-8990) | |
| 612-936, gnl|dasNov1|scaffold_43690 (8368-8890) | |
| 612-936, gnl|dasNov1|scaffold_43690 (8368-8831) | |
| 612-936, gnl|echTel1|scaffold_261496 (3235-2590) | |
| 612-936, gnl|echTel1|scaffold_261496 (3235-2732) | |
| 612-936, gnl|echTel1|scaffold_261496 (3235-2789) | |
| 612-936, gnl|galGal2|chr4 (12554529-12555190) | |
| 612-936, gnl|galGal2|chr4 (12554529-12555048) | |
| 612-936, gnl|galGal2|chr4 (12554529-12554987) | |
| 612-936, gnl|hg17|chr8 (19061198-19061800) | |
| 612-936, gnl|hg17|chrX (76567827-76568277) | |
| 612-936, gnl|Hg17|chrX (76568287-76567962) | |
| 612-936, gnl|hg17|chrX_random (772874-773384) | |
| 612-936, gnl|loxAfr1|scaffold_21371 (50786-51440) | |
| 612-936, gnl|loxAfr1|scaffold_21371 (50786-51308) | |
| 612-936, gnl|loxAfr1|scaffold_21371 (50786-51248) | |
| 612-936, gnl|mm7|chrX (101125445-101126010) | |
| 612-936, gnl|mm7|chrX (101125445-101125919) | |
| 612-936, gnl|mm7|chrX (101125445-101125875) | |
| 612-936, gnl|Mm7|chrX (101125896-101125574) | |
| 612-936, gnl|monDom2|scaffold_113 (501263-501894) | |
| 612-936, gnl|monDom2|scaffold_113 (501263-501733) | |
| 612-936, gnl|monDom2|scaffold_113 (501263-501689) | |
| 612-936, gnl|oryCun1|scaffold_193915 (5172-4565) | |
| 612-936, gnl|oryCun1|scaffold_193915 (5172-4655) | |
| 612-936, gnl|oryCun1|scaffold_210365 (4032-3573) | |
| 612-936, gnl|panTro1|chr7 (19880734-19881335) | |
| 612-936, gnl|panTro1|chrX (79062732-79063241) | |
| 612-936, gnl|panTro1|chrX (79062732-79063182) | |
| 612-936, gnl|rheMac2|chr8 (19056698-19057299) | |
| 612-936, gnl|rheMac2|chrX (76180095-76180605) | |
| 612-936, gnl|rheMac2|chrX (76180095-76180545) | |
| 612-936, gnl|rn3|chrX (93977736-93978302) | |
| 612-936, gnl|rn3|chrX (93977736-93978211) | |
| 612-936, gnl|rn3|chrX (93977736-93978167) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (0.149858) | |
| nmm (0.132802) | |
| ebs (0.118301) |