Non-Coding RNA Search

Ss1.1-rnmm15c_g23.5

Sequence:


               
               CCCGCGCCCTGGTCATCGAGGGCGGCTCCGCCATGCTGCACACGCTGCTCATCGGCTCGA
CCCTCGCCCTGCTTGGGGCAGCCCCAGGCCAGGCCCAGGTCCCCATCCAGGCCGACTTCG
ATGCCAGCCAGTTCCAGGGCACCTGGTACATGGTGGGGGTCGTGTCGGACGACCAGGCCT
TCCTGGACTCCAGGGACCACCTGAAGATGCCTGTCGTCCTGGTGACCCCCTTGGCCAATG
GCGACCTGGCCCTCAAGTTCGGGTACTCCACGCCGGACGGCGGGTGCCAGAAGGCAGACG
TGACCTTCACCAAGGGTGCCGTGGACGGGCAGTTCAGCAACGCGGCCTTGGCCCAGACAG
ACATCCGGGTGGCGGCCACGGACTACAAGCACTTCGCCGTGTTGTACGTCGAGACGCAGA
AGGGAGGCGTGAGGAGCGTCTGGCTGCAGCTCTTCGCCCGGGCCCCAGAGCTGTTTCCTG
AAGGTGCCCAGAAGATGCAGCAGATGGCACTCCAAGTGGGCCTGAACCCCAGCCAGGGCG
CCCTGCTGCCCAAGTCAGACCAGTGTGCGGGTGCCTTCTCCTAGGCGCTGTCGAGCTTGC
AGAGAGGGATCCGGCCGGGAGTCCCTGCCCTCCTCAAAGAGCACCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGCGCCCTGGTCATCGAGGGCGGCTCCGCCATGCTGCACACGCTGCTCATCGGCTCGA
CCCTCGCCCTGCTTGGGGCAGCCCCAGGCCAGGCCCAGGTCCCCATCCAGGCCGACTTCG
ATGCCAGCCAGTTCCAGGGCACCTGGTACATGGTGGGGGTCGTGTCGGACGACCAGGCCT
TCCTGGACTCCAGGGACCACCTGAAGATGCCTGTCGTCCTGGTGACCCCCTTGGCCAATG
GCGACCTGGCCCTCAAGTTCGGGTACTCCACGCCGGACGGCGGGTGCCAGAAGGCAGACG
TGACCTTCACCAAGGGTGCCGTGGACGGGCAGTTCAGCAACGCGGCCTTGGCCCAGACAG
ACATCCGGGTGGCGGCCACGGACTACAAGCACTTCGCCGTGTTGTACGTCGAGACGCAGA
AGGGAGGCGTGAGGAGCGTCTGGCTGCAGCTCTTCGCCCGGGCCCCAGAGCTGTTTCCTG
AAGGTGCCCAGAAGATGCAGCAGATGGCACTCCAAGTGGGCCTGAACCCCAGCCAGGGCG
CCCTGCTGCCCAAGTCAGACCAGTGTGCGGGTGCCTTCTCCTAGGCGCTGTCGAGCTTGC
AGAGAGGGATCCGGCCGGGAGTCCCTGCCCTCCTCAAAGAGCACCGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61841923|ref|XP_592908.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61841923|ref|XP_592908.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               129-269, + strand, RNAz p=0.736058
               

               
               155-272, + strand, RNAz p=0.994613
               

               
               449-558, - strand, RNAz p=0.531447

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               129-269, + strand, RNAz p=0.736058
               

               
               155-272, + strand, RNAz p=0.994613
               

               
               449-558, - strand, RNAz p=0.531447

Homologous human UTR: 3 entry(ies)

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Homologous human UTR: 3 entry(ies)

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               5' of AK127160, +
               

               
               3' of NM_207510, +
               

               
               3' of NM_207510, +

Homologous human UTR: 3 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK127160, +
               

               
               3' of NM_207510, +
               

               
               3' of NM_207510, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               129-272, gnl|bosTau2|chr11 (86309614-86309757)
               

               
               129-272, gnl|canFam2|chr9 (51978949-51978519)
               

               
               129-272, gnl|echTel1|scaffold_196698 (416-815)
               

               
               129-272, gnl|hg17|chr9 (137153666-137154106)
               

               
               129-272, gnl|Hg17|chr9 (137153855-137153998)
               

               
               129-272, gnl|mm7|chr2 (25472788-25472413)
               

               
               129-272, gnl|Mm7|chr2 (25472656-25472527)
               

               
               129-272, gnl|panTro1|chr11 (121926248-121926688)
               

               
               129-272, gnl|rheMac2|chr15 (1274311-1273883)
               

               
               129-272, gnl|rn3|chr3 (3631484-3631110)
               


               
               449-558, gnl|bosTau2|chr11 (86310826-86310935)
               

               
               449-558, gnl|canFam2|chr9 (51977820-51977482)
               

               
               449-558, gnl|hg17|chr9 (137155200-137155561)
               

               
               449-558, gnl|Hg17|chr9 (137155317-137155426)
               

               
               449-558, gnl|xenTro1|scaffold_3442 (11989-11702)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-272, gnl|bosTau2|chr11 (86309614-86309757)
               

               
               129-272, gnl|canFam2|chr9 (51978949-51978519)
               

               
               129-272, gnl|echTel1|scaffold_196698 (416-815)
               

               
               129-272, gnl|hg17|chr9 (137153666-137154106)
               

               
               129-272, gnl|Hg17|chr9 (137153855-137153998)
               

               
               129-272, gnl|mm7|chr2 (25472788-25472413)
               

               
               129-272, gnl|Mm7|chr2 (25472656-25472527)
               

               
               129-272, gnl|panTro1|chr11 (121926248-121926688)
               

               
               129-272, gnl|rheMac2|chr15 (1274311-1273883)
               

               
               129-272, gnl|rn3|chr3 (3631484-3631110)
               


               
               449-558, gnl|bosTau2|chr11 (86310826-86310935)
               

               
               449-558, gnl|canFam2|chr9 (51977820-51977482)
               

               
               449-558, gnl|hg17|chr9 (137155200-137155561)
               

               
               449-558, gnl|Hg17|chr9 (137155317-137155426)
               

               
               449-558, gnl|xenTro1|scaffold_3442 (11989-11702)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nmm (0.929615)
               

               
               fhi (0.169578)
               

               
               cbr (0.127975)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.929615)
               

               
               fhi (0.169578)
               

               
               cbr (0.127975)

	129-269, + strand, RNAz p=0.736058
	155-272, + strand, RNAz p=0.994613
	449-558, - strand, RNAz p=0.531447

	129-272, gnl\|bosTau2\|chr11 (86309614-86309757)
	129-272, gnl\|canFam2\|chr9 (51978949-51978519)
	129-272, gnl\|echTel1\|scaffold_196698 (416-815)
	129-272, gnl\|hg17\|chr9 (137153666-137154106)
	129-272, gnl\|Hg17\|chr9 (137153855-137153998)
	129-272, gnl\|mm7\|chr2 (25472788-25472413)
	129-272, gnl\|Mm7\|chr2 (25472656-25472527)
	129-272, gnl\|panTro1\|chr11 (121926248-121926688)
	129-272, gnl\|rheMac2\|chr15 (1274311-1273883)
	129-272, gnl\|rn3\|chr3 (3631484-3631110)

	449-558, gnl\|bosTau2\|chr11 (86310826-86310935)
	449-558, gnl\|canFam2\|chr9 (51977820-51977482)
	449-558, gnl\|hg17\|chr9 (137155200-137155561)
	449-558, gnl\|Hg17\|chr9 (137155317-137155426)
	449-558, gnl\|xenTro1\|scaffold_3442 (11989-11702)