Non-Coding RNA Search

Ss1.1-rnmm16c_a11.5

Sequence:


               
               GGCAGATGCCATGGAGTACACCGGGAGCCAATATATTGGGGAATTTGTAGATGGGAGGAT
GGAGGGCAAAGCCGAATACATCCTCCCTACTGAAACAAAATATGTTGGTGAAATGAAGGA
CGGCATGTTTCATGGCCAAGGAACTTTGTACTTCCCCAGCGGGAGCCGATTTGATGCCGT
TGGGGAGAAAGGATTGGTGGTGAAGGGCAGGTACACCTTCTCGGATGGGCTGCAGTACGA
CGCTGAGAACTGGCACTACTGTGACAGCTACGATCGGAGATTTTACACCGAGATCTGCCA
CGGCTTGAAGCCTGCAGGAATCTCTCAACTTACCAACATGGACCCGCCTAGAGAAATCCC
TCCCGGCTGGTATGACTGCGGAGATGGCTTCTACAACCCCACCACAAGAATAGTCAAGGA
CTATAGGGGTCGCTTTCTGAGAAATGCAGATGATGACGAACACGAGTGGATTGTCCGGAC
GTGCCGGAAGGGCTGGGATGAGACTATGGGTCACAAGCCCAAGCTGTGAGTTCTGCGGCC
ACCTCCCTCACCAGTTTCCTTCTGTGCCACTGGCATTGGCTGGCCCAGGGGGCAGCCCGT
AGTTCTAGAACCTGACTTTTGACTCAGGAATAAAGGCTTTCTGCAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGATGCCATGGAGTACACCGGGAGCCAATATATTGGGGAATTTGTAGATGGGAGGAT
GGAGGGCAAAGCCGAATACATCCTCCCTACTGAAACAAAATATGTTGGTGAAATGAAGGA
CGGCATGTTTCATGGCCAAGGAACTTTGTACTTCCCCAGCGGGAGCCGATTTGATGCCGT
TGGGGAGAAAGGATTGGTGGTGAAGGGCAGGTACACCTTCTCGGATGGGCTGCAGTACGA
CGCTGAGAACTGGCACTACTGTGACAGCTACGATCGGAGATTTTACACCGAGATCTGCCA
CGGCTTGAAGCCTGCAGGAATCTCTCAACTTACCAACATGGACCCGCCTAGAGAAATCCC
TCCCGGCTGGTATGACTGCGGAGATGGCTTCTACAACCCCACCACAAGAATAGTCAAGGA
CTATAGGGGTCGCTTTCTGAGAAATGCAGATGATGACGAACACGAGTGGATTGTCCGGAC
GTGCCGGAAGGGCTGGGATGAGACTATGGGTCACAAGCCCAAGCTGTGAGTTCTGCGGCC
ACCTCCCTCACCAGTTTCCTTCTGTGCCACTGGCATTGGCTGGCCCAGGGGGCAGCCCGT
AGTTCTAGAACCTGACTTTTGACTCAGGAATAAAGGCTTTCTGCAGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57092129|ref|XP_537860.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57092129|ref|XP_537860.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               89-206, + strand, RNAz p=0.507145

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-206, + strand, RNAz p=0.507145

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               56-206, gnl|bosTau2|chr11 (73965587-73965437)
               

               
               56-206, gnl|canFam2|chr9 (63742671-63742498)
               

               
               56-206, gnl|danRer3|chr10 (3980086-3980234)
               

               
               56-206, gnl|echTel1|scaffold_59379 (1735-1562)
               

               
               56-206, gnl|fr1|chrUn (202253256-202253102)
               

               
               56-206, gnl|hg17|chr9 (122008570-122008743)
               

               
               56-206, gnl|Hg17|chr9 (122008599-122008749)
               

               
               56-206, gnl|mm7|chr2 (36060218-36060390)
               

               
               56-206, gnl|Mm7|chr2 (36060246-36060396)
               

               
               56-206, gnl|oryCun1|scaffold_212100 (36143-36316)
               

               
               56-206, gnl|panTro1|chr11_random (4109348-4109175)
               

               
               56-206, gnl|rheMac2|chr15 (13838324-13838151)
               

               
               56-206, gnl|rn3|chr3 (15061951-15062123)
               

               
               56-206, gnl|tetNig1|chr4 (1130211-1130043)
               


               
               447-648, gnl|bosTau2|chr11 (73934675-73934474)
               

               
               447-648, gnl|Hg17|chr9 (122041715-122041915)
               

               
               447-648, gnl|Mm7|chr2 (36086823-36087018)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-206, gnl|bosTau2|chr11 (73965587-73965437)
               

               
               56-206, gnl|canFam2|chr9 (63742671-63742498)
               

               
               56-206, gnl|danRer3|chr10 (3980086-3980234)
               

               
               56-206, gnl|echTel1|scaffold_59379 (1735-1562)
               

               
               56-206, gnl|fr1|chrUn (202253256-202253102)
               

               
               56-206, gnl|hg17|chr9 (122008570-122008743)
               

               
               56-206, gnl|Hg17|chr9 (122008599-122008749)
               

               
               56-206, gnl|mm7|chr2 (36060218-36060390)
               

               
               56-206, gnl|Mm7|chr2 (36060246-36060396)
               

               
               56-206, gnl|oryCun1|scaffold_212100 (36143-36316)
               

               
               56-206, gnl|panTro1|chr11_random (4109348-4109175)
               

               
               56-206, gnl|rheMac2|chr15 (13838324-13838151)
               

               
               56-206, gnl|rn3|chr3 (15061951-15062123)
               

               
               56-206, gnl|tetNig1|chr4 (1130211-1130043)
               


               
               447-648, gnl|bosTau2|chr11 (73934675-73934474)
               

               
               447-648, gnl|Hg17|chr9 (122041715-122041915)
               

               
               447-648, gnl|Mm7|chr2 (36086823-36087018)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hea (0.204499)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               nmm (0.132802)

	56-206, gnl\|bosTau2\|chr11 (73965587-73965437)
	56-206, gnl\|canFam2\|chr9 (63742671-63742498)
	56-206, gnl\|danRer3\|chr10 (3980086-3980234)
	56-206, gnl\|echTel1\|scaffold_59379 (1735-1562)
	56-206, gnl\|fr1\|chrUn (202253256-202253102)
	56-206, gnl\|hg17\|chr9 (122008570-122008743)
	56-206, gnl\|Hg17\|chr9 (122008599-122008749)
	56-206, gnl\|mm7\|chr2 (36060218-36060390)
	56-206, gnl\|Mm7\|chr2 (36060246-36060396)
	56-206, gnl\|oryCun1\|scaffold_212100 (36143-36316)
	56-206, gnl\|panTro1\|chr11_random (4109348-4109175)
	56-206, gnl\|rheMac2\|chr15 (13838324-13838151)
	56-206, gnl\|rn3\|chr3 (15061951-15062123)
	56-206, gnl\|tetNig1\|chr4 (1130211-1130043)

	447-648, gnl\|bosTau2\|chr11 (73934675-73934474)
	447-648, gnl\|Hg17\|chr9 (122041715-122041915)
	447-648, gnl\|Mm7\|chr2 (36086823-36087018)