Non-Coding RNA Search

Ss1.1-rnmm17c_e2.5

Sequence:


               
               TGTGCCTTTTCAGAACCAACTAAACTTCTATAAAGCATTTCTGGTTCTTTCAAAGTTGGT
GTTGTAAGGAGCAATGTAGTTGATGGCTATAGTACTTTATATTTTTGCTTATAATGACAA
CCAATTCTTTTTCACTTGTTAGGTTGAGAAGTTTCATTTAGTGGCAGCTGAAGGGCCATT
TTCAATTGGGAAAATTCATTTATATCTGTGGTAAACTTTATTTTGATGAAAAGTTGCACT
AGTATTTTACCACCAGATGAAAAAAAGATGAGCATCATTTAAAAATTAATGTATTTAAAG
TACAGAGAAAAACATGTATATAATATATCAGGCTTTGTTTTGAATGACTCTTTTGTCCCC
AATCCTTAATGTAAAGATCTTGTGCTATAACTTTTAAAGCCATACAAATAAGAGTGCTAA
ACTGTGGACTTAAAAGTAGGTGTGTAAATATTTTTAATCAGTATTACTTGGAAAATAAAA
TATAACAACCACATAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGCCTTTTCAGAACCAACTAAACTTCTATAAAGCATTTCTGGTTCTTTCAAAGTTGGT
GTTGTAAGGAGCAATGTAGTTGATGGCTATAGTACTTTATATTTTTGCTTATAATGACAA
CCAATTCTTTTTCACTTGTTAGGTTGAGAAGTTTCATTTAGTGGCAGCTGAAGGGCCATT
TTCAATTGGGAAAATTCATTTATATCTGTGGTAAACTTTATTTTGATGAAAAGTTGCACT
AGTATTTTACCACCAGATGAAAAAAAGATGAGCATCATTTAAAAATTAATGTATTTAAAG
TACAGAGAAAAACATGTATATAATATATCAGGCTTTGTTTTGAATGACTCTTTTGTCCCC
AATCCTTAATGTAAAGATCTTGTGCTATAACTTTTAAAGCCATACAAATAAGAGTGCTAA
ACTGTGGACTTAAAAGTAGGTGTGTAAATATTTTTAATCAGTATTACTTGGAAAATAAAA
TATAACAACCACATAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               153-266, + strand, RNAz p=0.580665

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-266, + strand, RNAz p=0.580665

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-500, gnl|bosTau2|chr9 (4166988-4167488)
               

               
               1-500, gnl|Hg17|chr5 (43211604-43212108)
               

               
               1-500, gnl|Mm7|chr13_random (422082-422584)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-500, gnl|bosTau2|chr9 (4166988-4167488)
               

               
               1-500, gnl|Hg17|chr5 (43211604-43212108)
               

               
               1-500, gnl|Mm7|chr13_random (422082-422584)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               rec (0.346141)
               

               
               vin (0.332557)
               

               
               tes (0.207814)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               nmm (0.132802)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               tes (0.207814)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               nmm (0.132802)

	1-500, gnl\|bosTau2\|chr9 (4166988-4167488)
	1-500, gnl\|Hg17\|chr5 (43211604-43212108)
	1-500, gnl\|Mm7\|chr13_random (422082-422584)

	rec (0.346141)
	vin (0.332557)
	tes (0.207814)
	mga (0.160205)
	fco (0.157208)
	nmm (0.132802)