Non-Coding RNA Search

Ss1.1-rnmm18c_n15.5

Sequence:


               
               CACAGCCTGTGGGTTGGCAGCTGCCCTCCTTCTAACATCTCATTGTTTCTCCTTCTCTCT
GGCTGAACTCCTTCCCCCCCGAGAAGGCAATGTTGAGCCGAAAGCGTGCGTCCCGGTGTC
TCACACCTGTGCTCTTTAAACACAGAGACCTGCCAAGACGCCCTCTCGTCCAACTATGCC
CAGGCTGAAGTCCTCACACTCTCTTAAAGCGGCACCAACGGGAGAGAGACAGGCAGACAG
ACAGAAAGCCAGAGGCTTAGGGCAACTCTGGAATCCAGGCAAGACTCTTTCGCTGGGAAA
GCCTCAGATATCCTTGTTTGCACAGGACTGACGGAAAAACCTCCCATGTGACCCTCAGGG
CCCAGAGCCATCGGGTCTGATGTTCTTGTTCTGTTGTACATTGAAGAGCTATATATGCAC
ATATAGTATCTATATGCATACATACTATACTATTGTGTGGTGTGCACGTGCTCTTGGTGG
TCTGTCTTCTTTGTTAGGCTGTGTCTCCCCGGACCCTTGCCCAGCCCCCATGCCCAGCCC
CTTCCCCTTACTGATTCCATTACCTATGGAATGTCCCAGGTAAAATGCACCTGCAAACTG
CCAGTCCAGCTGGGTGGCCCCAGGCTGGACTCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGCCTGTGGGTTGGCAGCTGCCCTCCTTCTAACATCTCATTGTTTCTCCTTCTCTCT
GGCTGAACTCCTTCCCCCCCGAGAAGGCAATGTTGAGCCGAAAGCGTGCGTCCCGGTGTC
TCACACCTGTGCTCTTTAAACACAGAGACCTGCCAAGACGCCCTCTCGTCCAACTATGCC
CAGGCTGAAGTCCTCACACTCTCTTAAAGCGGCACCAACGGGAGAGAGACAGGCAGACAG
ACAGAAAGCCAGAGGCTTAGGGCAACTCTGGAATCCAGGCAAGACTCTTTCGCTGGGAAA
GCCTCAGATATCCTTGTTTGCACAGGACTGACGGAAAAACCTCCCATGTGACCCTCAGGG
CCCAGAGCCATCGGGTCTGATGTTCTTGTTCTGTTGTACATTGAAGAGCTATATATGCAC
ATATAGTATCTATATGCATACATACTATACTATTGTGTGGTGTGCACGTGCTCTTGGTGG
TCTGTCTTCTTTGTTAGGCTGTGTCTCCCCGGACCCTTGCCCAGCCCCCATGCCCAGCCC
CTTCCCCTTACTGATTCCATTACCTATGGAATGTCCCAGGTAAAATGCACCTGCAAACTG
CCAGTCCAGCTGGGTGGCCCCAGGCTGGACTCTCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               70-181, - strand, RNAz p=0.994605
               

               
               258-636, - strand, RNAz p=0.946271

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-181, - strand, RNAz p=0.994605
               

               
               258-636, - strand, RNAz p=0.946271

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               94-209, - strand, RNAmicro p=0.999958
               

               
               104-198, + strand, RNAmicro p=0.973895

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               94-209, - strand, RNAmicro p=0.999958
               

               
               104-198, + strand, RNAmicro p=0.973895

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-636, gnl|bosTau2|chr3 (25211120-25210478)
               

               
               1-636, gnl|Hg17|chr1 (110487420-110488072)
               

               
               1-636, gnl|Mm7|chr3 (107257865-107257200)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr3 (25211120-25210478)
               

               
               1-636, gnl|Hg17|chr1 (110487420-110488072)
               

               
               1-636, gnl|Mm7|chr3 (107257865-107257200)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	70-181, - strand, RNAz p=0.994605
	258-636, - strand, RNAz p=0.946271

	94-209, - strand, RNAmicro p=0.999958
	104-198, + strand, RNAmicro p=0.973895

	1-636, gnl\|bosTau2\|chr3 (25211120-25210478)
	1-636, gnl\|Hg17\|chr1 (110487420-110488072)
	1-636, gnl\|Mm7\|chr3 (107257865-107257200)