Non-Coding RNA Search

Ss1.1-rnmm19c_i12.5

Sequence:


               
               ACCAACCAACGCCAAAGGTGAGGAACCTCGCTGGTTGTAGCTGAAGCAATCTAGACTAGG
CATCACTGGACCCTCCATTTGTCCCATGACTCGAGTTACTACTAGGATAGTCACAAATGC
CGCATGTTTAAAAAGTACTCGCAGTCATCTTCTCTCTGCCCCTGCGCCGCCCCCCCCCCC
CGGGGGGGGTGGCCACCTTCTCTCTCTCTCCAGTCCCTTTGGTGAGGGGAGGGGGCAGGG
TGAGGGGCCAACAGGCCTGGCCCCTGCTCTCCCTTGCCAGGCCAGGCCCAGCCCCGGGGG
CCTTTGTGGATGGCTGGGAAGGTCGCGTGGCTGGCCCCAGGGCCTGCGCAGGCCCAAGGC
CAGCTGCCTGGGTTTATTTTTTATTTAACTTGATTTTCTGTTTTGTGTGTGTCCACCCGT
CCCCCCGCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAACCAACGCCAAAGGTGAGGAACCTCGCTGGTTGTAGCTGAAGCAATCTAGACTAGG
CATCACTGGACCCTCCATTTGTCCCATGACTCGAGTTACTACTAGGATAGTCACAAATGC
CGCATGTTTAAAAAGTACTCGCAGTCATCTTCTCTCTGCCCCTGCGCCGCCCCCCCCCCC
CGGGGGGGGTGGCCACCTTCTCTCTCTCTCCAGTCCCTTTGGTGAGGGGAGGGGGCAGGG
TGAGGGGCCAACAGGCCTGGCCCCTGCTCTCCCTTGCCAGGCCAGGCCCAGCCCCGGGGG
CCTTTGTGGATGGCTGGGAAGGTCGCGTGGCTGGCCCCAGGGCCTGCGCAGGCCCAAGGC
CAGCTGCCTGGGTTTATTTTTTATTTAACTTGATTTTCTGTTTTGTGTGTGTCCACCCGT
CCCCCCGCCCCC

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               3-136, gnl|bosTau2|chr7 (13022959-13022825)
               

               
               3-136, gnl|canFam2|chr20 (55604736-55604902)
               

               
               3-136, gnl|hg17|chr19 (7884636-7884828)
               

               
               3-136, gnl|Hg17|chr19 (7884693-7884827)
               

               
               3-136, gnl|mm7|chr8 (4211453-4211627)
               

               
               3-136, gnl|Mm7|chr8 (4211492-4211622)
               

               
               3-136, gnl|monDom2|scaffold_54 (90566-90316)
               

               
               3-136, gnl|oryCun1|scaffold_157837 (3345-3189)
               

               
               3-136, gnl|panTro1|chr20 (8239605-8239797)
               

               
               3-136, gnl|rheMac2|chr19 (8010053-8009874)
               

               
               3-136, gnl|rn3|chr12 (1544045-1543875)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-136, gnl|bosTau2|chr7 (13022959-13022825)
               

               
               3-136, gnl|canFam2|chr20 (55604736-55604902)
               

               
               3-136, gnl|hg17|chr19 (7884636-7884828)
               

               
               3-136, gnl|Hg17|chr19 (7884693-7884827)
               

               
               3-136, gnl|mm7|chr8 (4211453-4211627)
               

               
               3-136, gnl|Mm7|chr8 (4211492-4211622)
               

               
               3-136, gnl|monDom2|scaffold_54 (90566-90316)
               

               
               3-136, gnl|oryCun1|scaffold_157837 (3345-3189)
               

               
               3-136, gnl|panTro1|chr20 (8239605-8239797)
               

               
               3-136, gnl|rheMac2|chr19 (8010053-8009874)
               

               
               3-136, gnl|rn3|chr12 (1544045-1543875)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

	3-136, gnl\|bosTau2\|chr7 (13022959-13022825)
	3-136, gnl\|canFam2\|chr20 (55604736-55604902)
	3-136, gnl\|hg17\|chr19 (7884636-7884828)
	3-136, gnl\|Hg17\|chr19 (7884693-7884827)
	3-136, gnl\|mm7\|chr8 (4211453-4211627)
	3-136, gnl\|Mm7\|chr8 (4211492-4211622)
	3-136, gnl\|monDom2\|scaffold_54 (90566-90316)
	3-136, gnl\|oryCun1\|scaffold_157837 (3345-3189)
	3-136, gnl\|panTro1\|chr20 (8239605-8239797)
	3-136, gnl\|rheMac2\|chr19 (8010053-8009874)
	3-136, gnl\|rn3\|chr12 (1544045-1543875)