Non-Coding RNA Search

Ss1.1-rnmm19c_l5.5

Sequence:


               
               AAATATTCGGGTACAGGAGTTCTTGTGCGAAGGTCACGGACAAGATGGTGCCGCCGGTGC
AGGTCTCTCCGCTCATCAAGCTCGGCCGCTATTCCGCCCTGTTCCTCGGTGTGGCCTACG
GAGCCAAGCGCTACAATTACCTGAAACCCCGGGCAGAAGAGGAGAGGAGGATAGCAGCTG
AGGAGAAGAAGAAGCAGGATGAGCTGAAGCGCATTGAGCGAGAACTGGCAGAAGCCCAAG
AAGACAGCATATTAAAGTGAGCCTCCCTTTTTCCAGAGCAGCGTGGACGTGGACAAATAA
AGCTTTCTGTGCTATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATATTCGGGTACAGGAGTTCTTGTGCGAAGGTCACGGACAAGATGGTGCCGCCGGTGC
AGGTCTCTCCGCTCATCAAGCTCGGCCGCTATTCCGCCCTGTTCCTCGGTGTGGCCTACG
GAGCCAAGCGCTACAATTACCTGAAACCCCGGGCAGAAGAGGAGAGGAGGATAGCAGCTG
AGGAGAAGAAGAAGCAGGATGAGCTGAAGCGCATTGAGCGAGAACTGGCAGAAGCCCAAG
AAGACAGCATATTAAAGTGAGCCTCCCTTTTTCCAGAGCAGCGTGGACGTGGACAAATAA
AGCTTTCTGTGCTATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               ATP5I_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               ATP5I_PIG

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               35-359, gnl|bosTau2|chr1 (50305729-50305416)
               

               
               35-359, gnl|Mm7|chr8 (84414870-84415144)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-359, gnl|bosTau2|chr1 (50305729-50305416)
               

               
               35-359, gnl|Mm7|chr8 (84414870-84415144)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               nms (2.35244)
               

               
               fce (1.08637)
               

               
               nca (0.684369)
               

               
               mas (0.630915)
               

               
               pty (0.570858)
               

               
               cmu (0.55918)
               

               
               ill (0.526778)
               

               
               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               ese (0.506009)
               

               
               fli (0.405762)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               cbr (0.383926)
               

               
               nep (0.36785)
               

               
               mcp (0.341297)
               

               
               nje (0.33184)
               

               
               bfe (0.299715)
               

               
               eje (0.296501)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               nmm (0.132802)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (2.35244)
               

               
               fce (1.08637)
               

               
               nca (0.684369)
               

               
               mas (0.630915)
               

               
               pty (0.570858)
               

               
               cmu (0.55918)
               

               
               ill (0.526778)
               

               
               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               ese (0.506009)
               

               
               fli (0.405762)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               cbr (0.383926)
               

               
               nep (0.36785)
               

               
               mcp (0.341297)
               

               
               nje (0.33184)
               

               
               bfe (0.299715)
               

               
               eje (0.296501)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               nmm (0.132802)

	35-359, gnl\|bosTau2\|chr1 (50305729-50305416)
	35-359, gnl\|Mm7\|chr8 (84414870-84415144)

	nms (2.35244)
	fce (1.08637)
	nca (0.684369)
	mas (0.630915)
	pty (0.570858)
	cmu (0.55918)
	ill (0.526778)
	fbs (0.526039)
	fhi (0.508733)
	ese (0.506009)
	fli (0.405762)
	fcc (0.39557)
	col (0.390016)
	cbr (0.383926)
	nep (0.36785)
	mcp (0.341297)
	nje (0.33184)
	bfe (0.299715)
	eje (0.296501)
	hyp (0.285673)
	ebs (0.236602)
	nbm (0.198649)
	jej (0.197844)
	sto (0.179824)
	fty (0.17584)
	ton (0.1755)
	nco (0.161734)
	csp (0.161186)
	eli (0.151814)
	nmm (0.132802)