Non-Coding RNA Search

Ss1.1-rnmm21c_h24.5

Sequence:


               
               CCCAACGGTTTCTTTCTCCATCTCACGAACTCCTTAACCCGCATCCTTTCTGTTTCCCAG
GCTTATTTACCACTATCCCTTAGCTTCCAGGCTCCACTCTTCCCAACTTCGAAGTCCACT
GCCTTCCATGCTCCAGAGCGTTCTTCCTTTTTTCAAACACAATGATGATGATGATGATAA
TTTATTGCCCCCTGGTGGCCTCTTCATTAGGGACCAGAGTTGGGGGATTGGGGTAAGTGA
CCTGGCAGGGAGCAGGGTGCCAAGAGGGGGGCAGACCAGTGGGGATCTGATCCCAAAGAT
GGGGTGACCCCAGGGTCAGGGAGGCTGCCCCCAGGCCTGTATATTTAACCCCTATATTCC
AAGAGAAATGAATAGTAATAATAATAATTCTATTTATCATAAGTTATGATGACAGGTCAG
GTAGAGTGAGCTGGGGAGGGAAGGGGGTCCATTTCTGCTATGGAAATTTTAACCAAATGC
ATCTCTGTCTAGAAAAAGTGATAGTGGAGATCCTGTTAATAGCATTTCTATCTTCAGGGT
CTCAGTTAATGGTGTTTCTCTTAATGGAATCTCTGCTAATAGGTTTGATTAGCTAGATCT
CTGTTAAAGAGTTGATGGGGTATCTCCCACTTAAGGGATCCCTAAATATTTCTAGCCCCG
CCCAGAAGCTGTGAAACCTCAAGTCCTATGGAGGGGAGGACTGGAATGTACCCCAGCTCC
CTTGACCCCAGAGCAGGTTCTTCCACTGCCCCTCCCCTGACACCGTGACCCCATCAGGCT
AATCCCTCGTTGCCATGGTAACGGAGAGCTTGCAGCTGCCATTTTAGAAATGCTCTTTGG
GGAAGCCCACCTAACCGGAGGAGGACATTGGCTTGGAGGTGCCTCTCCTGAAGAATAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAACGGTTTCTTTCTCCATCTCACGAACTCCTTAACCCGCATCCTTTCTGTTTCCCAG
GCTTATTTACCACTATCCCTTAGCTTCCAGGCTCCACTCTTCCCAACTTCGAAGTCCACT
GCCTTCCATGCTCCAGAGCGTTCTTCCTTTTTTCAAACACAATGATGATGATGATGATAA
TTTATTGCCCCCTGGTGGCCTCTTCATTAGGGACCAGAGTTGGGGGATTGGGGTAAGTGA
CCTGGCAGGGAGCAGGGTGCCAAGAGGGGGGCAGACCAGTGGGGATCTGATCCCAAAGAT
GGGGTGACCCCAGGGTCAGGGAGGCTGCCCCCAGGCCTGTATATTTAACCCCTATATTCC
AAGAGAAATGAATAGTAATAATAATAATTCTATTTATCATAAGTTATGATGACAGGTCAG
GTAGAGTGAGCTGGGGAGGGAAGGGGGTCCATTTCTGCTATGGAAATTTTAACCAAATGC
ATCTCTGTCTAGAAAAAGTGATAGTGGAGATCCTGTTAATAGCATTTCTATCTTCAGGGT
CTCAGTTAATGGTGTTTCTCTTAATGGAATCTCTGCTAATAGGTTTGATTAGCTAGATCT
CTGTTAAAGAGTTGATGGGGTATCTCCCACTTAAGGGATCCCTAAATATTTCTAGCCCCG
CCCAGAAGCTGTGAAACCTCAAGTCCTATGGAGGGGAGGACTGGAATGTACCCCAGCTCC
CTTGACCCCAGAGCAGGTTCTTCCACTGCCCCTCCCCTGACACCGTGACCCCATCAGGCT
AATCCCTCGTTGCCATGGTAACGGAGAGCTTGCAGCTGCCATTTTAGAAATGCTCTTTGG
GGAAGCCCACCTAACCGGAGGAGGACATTGGCTTGGAGGTGCCTCTCCTGAAGAATAGGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               158-381, - strand, RNAz p=0.983778
               

               
               460-728, - strand, RNAz p=0.923321

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-381, - strand, RNAz p=0.983778
               

               
               460-728, - strand, RNAz p=0.923321

Similar Transcript(s): 2 entry(ies)

More info

Similar Transcript(s): 2 entry(ies)

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               254-381, UI-H-DF1-auf-b-15-0-UI.s1 NCI_CGAP_DF1 Homo sapiens cDNA clone 
(gb|BM992111.1|), blast E-value=8.99998e-41, identity=94.53% 
               

               
               179-334, AGENCOURT_12236643 NIH_MGC_136 Mus musculus cDNA clone 
(gb|CB321530.1|), blast E-value=1e-39, identity=89.81%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               254-381, UI-H-DF1-auf-b-15-0-UI.s1 NCI_CGAP_DF1 Homo sapiens cDNA clone 
(gb|BM992111.1|), blast E-value=8.99998e-41, identity=94.53% 
               

               
               179-334, AGENCOURT_12236643 NIH_MGC_136 Mus musculus cDNA clone 
(gb|CB321530.1|), blast E-value=1e-39, identity=89.81%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-899, gnl|bosTau2|chr5 (20611341-20610449)
               

               
               1-899, gnl|Hg17|chr12 (52007890-52007021)
               

               
               1-899, gnl|Mm7|chr15 (102344012-102343138)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-899, gnl|bosTau2|chr5 (20611341-20610449)
               

               
               1-899, gnl|Hg17|chr12 (52007890-52007021)
               

               
               1-899, gnl|Mm7|chr15 (102344012-102343138)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               nmm (0.132802)

	158-381, - strand, RNAz p=0.983778
	460-728, - strand, RNAz p=0.923321

	254-381, UI-H-DF1-auf-b-15-0-UI.s1 NCI_CGAP_DF1 Homo sapiens cDNA clone (gb\|BM992111.1\|), blast E-value=8.99998e-41, identity=94.53%
	179-334, AGENCOURT_12236643 NIH_MGC_136 Mus musculus cDNA clone (gb\|CB321530.1\|), blast E-value=1e-39, identity=89.81%

	1-899, gnl\|bosTau2\|chr5 (20611341-20610449)
	1-899, gnl\|Hg17\|chr12 (52007890-52007021)
	1-899, gnl\|Mm7\|chr15 (102344012-102343138)