Ss1.1-rnmm21c_i11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTCCGAAGGGGCTTTCTACGCCGCTTTTTTCGGCGACTTTTTGGTCTTCCGTATCTTG CCCCCGAGCTCCCACACCCTTGTTGGCCCTGCCTTTTCTTGGGTCGCTTCTCCCCGACCG CCGAGCCCGGAATTTTGATCGCAATCCGGATCCGCAGCCGGGCCTAGCCACCCCACGCGG GCCACTACTGGCTCGGGCGGAAAGCTGGGACCGAGCGCGCCGGGCCGTCGCTGCTCCGGC CGTGAGGCTCCTGGGCGGGCGGTGCCCGTAGAACGCTTGACCGAACGAAGAAGATTGTCT TGGGACCCTGCATGGTGTTTGAAAGGGTGGTGAGGAACTAAGGTAGAAGAATACATGTTC ACTTTTCGTGAACAAGAGCATGTTCCCAAACTCAATTTTGGGTCGCCCGCCTTTTACTCC AAACCATCAACAACATAATACCTTCTTCACCCTGTCACCAAGTCCTTATTCACACCAGCA GCTTATAGATGCACAGTTCAACTTTCAAAATACAGACTTGTCCAGAGCTGTGTCATTACA GCAGTTGACATATGGAAATGTCAGTCCAATACAGACCTCAGCTTCCCCATTATTTCGAGG GAGGAAGTAAGTATTCCTTACATATTTTAAAGGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTCCGAAGGGGCTTTCTACGCCGCTTTTTTCGGCGACTTTTTGGTCTTCCGTATCTTG CCCCCGAGCTCCCACACCCTTGTTGGCCCTGCCTTTTCTTGGGTCGCTTCTCCCCGACCG CCGAGCCCGGAATTTTGATCGCAATCCGGATCCGCAGCCGGGCCTAGCCACCCCACGCGG GCCACTACTGGCTCGGGCGGAAAGCTGGGACCGAGCGCGCCGGGCCGTCGCTGCTCCGGC CGTGAGGCTCCTGGGCGGGCGGTGCCCGTAGAACGCTTGACCGAACGAAGAAGATTGTCT TGGGACCCTGCATGGTGTTTGAAAGGGTGGTGAGGAACTAAGGTAGAAGAATACATGTTC ACTTTTCGTGAACAAGAGCATGTTCCCAAACTCAATTTTGGGTCGCCCGCCTTTTACTCC AAACCATCAACAACATAATACCTTCTTCACCCTGTCACCAAGTCCTTATTCACACCAGCA GCTTATAGATGCACAGTTCAACTTTCAAAATACAGACTTGTCCAGAGCTGTGTCATTACA GCAGTTGACATATGGAAATGTCAGTCCAATACAGACCTCAGCTTCCCCATTATTTCGAGG GAGGAAGTAAGTATTCCTTACATATTTTAAAGGAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 341-459, - strand, RNAz p=0.967293 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 341-459, - strand, RNAz p=0.967293 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 2-272, gnl|bosTau2|chr10 (4324674-4324939) | |
| 2-272, gnl|canFam2|chr3 (30219015-30218556) | |
| 2-272, gnl|dasNov1|scaffold_28665 (50463-49977) | |
| 2-272, gnl|echTel1|scaffold_86405 (41-523) | |
| 2-272, gnl|hg17|chr5 (78943955-78944454) | |
| 2-272, gnl|Hg17|chr5 (78944048-78944319) | |
| 2-272, gnl|loxAfr1|scaffold_62468 (4824-4335) | |
| 2-272, gnl|mm7|chr13 (90255383-90254915) | |
| 2-272, gnl|Mm7|chr13 (90255310-90255044) | |
| 2-272, gnl|oryCun1|scaffold_2819 (4282-3864) | |
| 2-272, gnl|panTro1|chr4 (36242494-36242005) | |
| 2-272, gnl|rheMac2|chr6 (75833856-75834355) | |
| 2-272, gnl|rn3|chr2 (23391860-23391394) | |
| 341-531, gnl|bosTau2|chr10 (4331498-4331689) | |
| 341-531, gnl|canFam2|chr3 (30211772-30211478) | |
| 341-531, gnl|echTel1|scaffold_207977 (608-885) | |
| 341-531, gnl|galGal2|chrZ (5436583-5436271) | |
| 341-531, gnl|hg17|chr5 (78951101-78951385) | |
| 341-531, gnl|Hg17|chr5 (78951189-78951380) | |
| 341-531, gnl|loxAfr1|scaffold_10713 (9587-9306) | |
| 341-531, gnl|mm7|chr13 (90249482-90249205) | |
| 341-531, gnl|Mm7|chr13 (90249399-90249208) | |
| 341-531, gnl|monDom2|scaffold_27 (36439903-36439592) | |
| 341-531, gnl|panTro1|chr4 (36235350-36235066) | |
| 341-531, gnl|rheMac2|chr6 (75840899-75841177) | |
| 341-531, gnl|rn3|chr2 (23385883-23385606) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-272, gnl|bosTau2|chr10 (4324674-4324939) | |
| 2-272, gnl|canFam2|chr3 (30219015-30218556) | |
| 2-272, gnl|dasNov1|scaffold_28665 (50463-49977) | |
| 2-272, gnl|echTel1|scaffold_86405 (41-523) | |
| 2-272, gnl|hg17|chr5 (78943955-78944454) | |
| 2-272, gnl|Hg17|chr5 (78944048-78944319) | |
| 2-272, gnl|loxAfr1|scaffold_62468 (4824-4335) | |
| 2-272, gnl|mm7|chr13 (90255383-90254915) | |
| 2-272, gnl|Mm7|chr13 (90255310-90255044) | |
| 2-272, gnl|oryCun1|scaffold_2819 (4282-3864) | |
| 2-272, gnl|panTro1|chr4 (36242494-36242005) | |
| 2-272, gnl|rheMac2|chr6 (75833856-75834355) | |
| 2-272, gnl|rn3|chr2 (23391860-23391394) | |
| 341-531, gnl|bosTau2|chr10 (4331498-4331689) | |
| 341-531, gnl|canFam2|chr3 (30211772-30211478) | |
| 341-531, gnl|echTel1|scaffold_207977 (608-885) | |
| 341-531, gnl|galGal2|chrZ (5436583-5436271) | |
| 341-531, gnl|hg17|chr5 (78951101-78951385) | |
| 341-531, gnl|Hg17|chr5 (78951189-78951380) | |
| 341-531, gnl|loxAfr1|scaffold_10713 (9587-9306) | |
| 341-531, gnl|mm7|chr13 (90249482-90249205) | |
| 341-531, gnl|Mm7|chr13 (90249399-90249208) | |
| 341-531, gnl|monDom2|scaffold_27 (36439903-36439592) | |
| 341-531, gnl|panTro1|chr4 (36235350-36235066) | |
| 341-531, gnl|rheMac2|chr6 (75840899-75841177) | |
| 341-531, gnl|rn3|chr2 (23385883-23385606) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| nmm (0.132802) | |
| ute (0.132784) |