Ss1.1-rnmm22c_g22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTGGATTGCTGGTCCATTGGCGTCATCACTTACATATTGCTGTGTGGGTACCCCCCCTT CTATGAAGAAACTGAGTCCAAGCTTTTTGAGAAGATCAAGGAGGGCTACTACGAGTTTGA GTCTCCGTTCTGGGATGACATTTCTGAGTCAGCCAAGGATTTTATTTGCCACTTGCTGGA GAAGGACCCGAAGGAGCGGTACACCTGTGAAAAGGCCTTGAGACACCCCTGGATTAACGG GAACACAGCCCTCCACCGGGACATCTACCCGTCCGTCAGCCTCCAGATCCAGAAGAACTT TGCCAAGAGCAAGTGGAGGCAAGCCTTCAACGCGGCAGCCGTGGTGCACCACATGAGAAA GCTGCACATGAACCTGCACAGCCCAGGGGGCCGCCCGGAGGTGGAGAACAGACCGCCTGT GACTCGAGCCTCCGATGCCTCGAGACCCAGCACCCCCGAGATCACCATCACCGAGGCACC CGCCCTGGACCAGAGCGTGGCGCTCCCTGCCCTGCCCCGACTGCCCTGCCAGCACGGCCC CCGGCCCACTGCCCCCGGGGGCAGGTCCCTCAACTGCCTGGTCAACGGCTCCCTCCGCAT CAGCAGCAGCCTGGTGCCCATGGAGCAGGGGCGCCTGGCCACTGGGCCGTGCGGCTGCTG CTCCAGCTGCCTGAGCGTCGAGACCAAGGGCAAGTCCTCCTACTGCTCCGAGCCCACGCT TCTCAAAAAGGCCAAAAAACAAAACTTCAAATCAGAGGTCATGGTGCCAGGGAAAGCGGG CGGCAGCTCCCACTGCCGAGTGGGGCAGACTGGAGTCTGTCTGATCATGTGATCCCTGGA GCTCGCCTCTGTGTCATTACACTTTTCAGGAAAGATGTTCGGCTCTGCTCTGCCCTTCCA AGCCTGGAGTCCACCCTGCCCCATCCTGCTTCATGCTCTGTGTTGTGCTGAATAAAATGG ACATATTTTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTGGATTGCTGGTCCATTGGCGTCATCACTTACATATTGCTGTGTGGGTACCCCCCCTT CTATGAAGAAACTGAGTCCAAGCTTTTTGAGAAGATCAAGGAGGGCTACTACGAGTTTGA GTCTCCGTTCTGGGATGACATTTCTGAGTCAGCCAAGGATTTTATTTGCCACTTGCTGGA GAAGGACCCGAAGGAGCGGTACACCTGTGAAAAGGCCTTGAGACACCCCTGGATTAACGG GAACACAGCCCTCCACCGGGACATCTACCCGTCCGTCAGCCTCCAGATCCAGAAGAACTT TGCCAAGAGCAAGTGGAGGCAAGCCTTCAACGCGGCAGCCGTGGTGCACCACATGAGAAA GCTGCACATGAACCTGCACAGCCCAGGGGGCCGCCCGGAGGTGGAGAACAGACCGCCTGT GACTCGAGCCTCCGATGCCTCGAGACCCAGCACCCCCGAGATCACCATCACCGAGGCACC CGCCCTGGACCAGAGCGTGGCGCTCCCTGCCCTGCCCCGACTGCCCTGCCAGCACGGCCC CCGGCCCACTGCCCCCGGGGGCAGGTCCCTCAACTGCCTGGTCAACGGCTCCCTCCGCAT CAGCAGCAGCCTGGTGCCCATGGAGCAGGGGCGCCTGGCCACTGGGCCGTGCGGCTGCTG CTCCAGCTGCCTGAGCGTCGAGACCAAGGGCAAGTCCTCCTACTGCTCCGAGCCCACGCT TCTCAAAAAGGCCAAAAAACAAAACTTCAAATCAGAGGTCATGGTGCCAGGGAAAGCGGG CGGCAGCTCCCACTGCCGAGTGGGGCAGACTGGAGTCTGTCTGATCATGTGATCCCTGGA GCTCGCCTCTGTGTCATTACACTTTTCAGGAAAGATGTTCGGCTCTGCTCTGCCCTTCCA AGCCTGGAGTCCACCCTGCCCCATCCTGCTTCATGCTCTGTGTTGTGCTGAATAAAATGG ACATATTTTTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 555-711, - strand, RNAz p=0.868838 | |
| 743-861, + strand, RNAz p=0.577933 | |
| 743-856, + strand, RNAz p=0.630305 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 555-711, - strand, RNAz p=0.868838 | |
| 743-861, + strand, RNAz p=0.577933 | |
| 743-856, + strand, RNAz p=0.630305 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_020439, + |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 40-157, gnl|bosTau2|chr16 (50631604-50631721) | |
| 40-157, gnl|canFam2|chr7 (11223735-11223877) | |
| 40-157, gnl|danRer3|chr23 (52449717-52449574) | |
| 40-157, gnl|dasNov1|scaffold_46722 (45045-44903) | |
| 40-157, gnl|echTel1|scaffold_311188 (31649-31521) | |
| 40-157, gnl|fr1|chrUn (207803659-207803777) | |
| 40-157, gnl|galGal2|chr26 (1690442-1690583) | |
| 40-157, gnl|hg17|chr1 (206170700-206170842) | |
| 40-157, gnl|Hg17|chr1 (206170720-206170837) | |
| 40-157, gnl|loxAfr1|scaffold_6769 (17654-17796) | |
| 40-157, gnl|mm7|chr1 (192903782-192903639) | |
| 40-157, gnl|Mm7|chr1 (192903754-192903637) | |
| 40-157, gnl|monDom2|scaffold_13 (12577313-12577475) | |
| 40-157, gnl|oryCun1|scaffold_194152 (135562-135416) | |
| 40-157, gnl|panTro1|chr1 (189785026-189785168) | |
| 40-157, gnl|rheMac2|chr1 (160793985-160793843) | |
| 40-157, gnl|rn3|chr13 (109386704-109386567) | |
| 40-157, gnl|tetNig1|chrUn_random (5111734-5111861) | |
| 40-157, gnl|xenTro1|scaffold_138 (1288002-1288128) | |
| 319-742, gnl|bosTau2|chr16 (50634744-50635161) | |
| 319-742, gnl|Hg17|chr1 (206173531-206173954) | |
| 319-742, gnl|Mm7|chr1 (192901137-192900711) | |
| 743-870, gnl|bosTau2|chr16 (50635930-50636057) | |
| 743-870, gnl|canFam2|chr7 (11227591-11227747) | |
| 743-870, gnl|dasNov1|scaffold_46722 (41438-41216) | |
| 743-870, gnl|echTel1|scaffold_276964 (48647-48860) | |
| 743-870, gnl|hg17|chr1 (206174509-206174702) | |
| 743-870, gnl|Hg17|chr1 (206174526-206174653) | |
| 743-870, gnl|loxAfr1|scaffold_6769 (22266-22478) | |
| 743-870, gnl|mm7|chr1 (192900117-192899929) | |
| 743-870, gnl|Mm7|chr1 (192900098-192899983) | |
| 743-870, gnl|monDom2|scaffold_13 (12587568-12587755) | |
| 743-870, gnl|oryCun1|scaffold_209827 (55446-55637) | |
| 743-870, gnl|panTro1|chr1 (189788837-189789030) | |
| 743-870, gnl|rheMac2|chr1 (160790096-160789903) | |
| 743-870, gnl|rn3|chr13 (109383028-109382839) | |
| 743-870, gnl|xenTro1|scaffold_138 (1292867-1293059) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 40-157, gnl|bosTau2|chr16 (50631604-50631721) | |
| 40-157, gnl|canFam2|chr7 (11223735-11223877) | |
| 40-157, gnl|danRer3|chr23 (52449717-52449574) | |
| 40-157, gnl|dasNov1|scaffold_46722 (45045-44903) | |
| 40-157, gnl|echTel1|scaffold_311188 (31649-31521) | |
| 40-157, gnl|fr1|chrUn (207803659-207803777) | |
| 40-157, gnl|galGal2|chr26 (1690442-1690583) | |
| 40-157, gnl|hg17|chr1 (206170700-206170842) | |
| 40-157, gnl|Hg17|chr1 (206170720-206170837) | |
| 40-157, gnl|loxAfr1|scaffold_6769 (17654-17796) | |
| 40-157, gnl|mm7|chr1 (192903782-192903639) | |
| 40-157, gnl|Mm7|chr1 (192903754-192903637) | |
| 40-157, gnl|monDom2|scaffold_13 (12577313-12577475) | |
| 40-157, gnl|oryCun1|scaffold_194152 (135562-135416) | |
| 40-157, gnl|panTro1|chr1 (189785026-189785168) | |
| 40-157, gnl|rheMac2|chr1 (160793985-160793843) | |
| 40-157, gnl|rn3|chr13 (109386704-109386567) | |
| 40-157, gnl|tetNig1|chrUn_random (5111734-5111861) | |
| 40-157, gnl|xenTro1|scaffold_138 (1288002-1288128) | |
| 319-742, gnl|bosTau2|chr16 (50634744-50635161) | |
| 319-742, gnl|Hg17|chr1 (206173531-206173954) | |
| 319-742, gnl|Mm7|chr1 (192901137-192900711) | |
| 743-870, gnl|bosTau2|chr16 (50635930-50636057) | |
| 743-870, gnl|canFam2|chr7 (11227591-11227747) | |
| 743-870, gnl|dasNov1|scaffold_46722 (41438-41216) | |
| 743-870, gnl|echTel1|scaffold_276964 (48647-48860) | |
| 743-870, gnl|hg17|chr1 (206174509-206174702) | |
| 743-870, gnl|Hg17|chr1 (206174526-206174653) | |
| 743-870, gnl|loxAfr1|scaffold_6769 (22266-22478) | |
| 743-870, gnl|mm7|chr1 (192900117-192899929) | |
| 743-870, gnl|Mm7|chr1 (192900098-192899983) | |
| 743-870, gnl|monDom2|scaffold_13 (12587568-12587755) | |
| 743-870, gnl|oryCun1|scaffold_209827 (55446-55637) | |
| 743-870, gnl|panTro1|chr1 (189788837-189789030) | |
| 743-870, gnl|rheMac2|chr1 (160790096-160789903) | |
| 743-870, gnl|rn3|chr13 (109383028-109382839) | |
| 743-870, gnl|xenTro1|scaffold_138 (1292867-1293059) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |