Non-Coding RNA Search

Ss1.1-rnmm22c_k6.5

Sequence:


               
               CTGATCGTTGACAAGACCCAGCACCACGTCCACGATGGGGCAGAGCAAGTCAGGGAGGAC
GTTGGCCAGGACCCGGTTTACTAAGTTGTCCACGAGGTTGGGGAGAAGCCCTCGCAGCAG
TCTGACTTTGATGCCTCCCAGGAGGGTGTCACATCGCTCGATAACCAGACGCGGGTAACC
CGTGCGGTCCATGGTCAGCCGGACCTTGGCCGTGATGTTCACTTCCACAGCGATGTCCAG
GAAGCCAATAAGACTCTTCCCGTTGATGGCCACGCGGGTGTACAGGCTCAGGTAGACGCC
CACGCCTGGCAGAAGCCGCACAGACACCCGAGGGAGGGTGAGCTCCACGATGCGCAGCCC
TGTGATGCCCTGCACGGTGCTGAGGATGCCGCCCTCGCCGAGCACGCCCAGGACGCCCCC
TCCTCCGAGAAGTCCTCCATCACCAAGGAGACCACCTCCGCCGAGCAGGCCGCCTTGGCC
CGATAGGATGCCGTCGGCTGCCAGCATGCCCCCAGTGCCCAGCAAACCGCCTGGGCCCAG
GGCCCCTGTGGCTACACCGGGGGGGAGCTCTCCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGATCGTTGACAAGACCCAGCACCACGTCCACGATGGGGCAGAGCAAGTCAGGGAGGAC
GTTGGCCAGGACCCGGTTTACTAAGTTGTCCACGAGGTTGGGGAGAAGCCCTCGCAGCAG
TCTGACTTTGATGCCTCCCAGGAGGGTGTCACATCGCTCGATAACCAGACGCGGGTAACC
CGTGCGGTCCATGGTCAGCCGGACCTTGGCCGTGATGTTCACTTCCACAGCGATGTCCAG
GAAGCCAATAAGACTCTTCCCGTTGATGGCCACGCGGGTGTACAGGCTCAGGTAGACGCC
CACGCCTGGCAGAAGCCGCACAGACACCCGAGGGAGGGTGAGCTCCACGATGCGCAGCCC
TGTGATGCCCTGCACGGTGCTGAGGATGCCGCCCTCGCCGAGCACGCCCAGGACGCCCCC
TCCTCCGAGAAGTCCTCCATCACCAAGGAGACCACCTCCGCCGAGCAGGCCGCCTTGGCC
CGATAGGATGCCGTCGGCTGCCAGCATGCCCCCAGTGCCCAGCAAACCGCCTGGGCCCAG
GGCCCCTGTGGCTACACCGGGGGGGAGCTCTCCAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               438-576, - strand, RNAz p=0.7545

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               438-576, - strand, RNAz p=0.7545

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               388-496, - strand, RNAmicro p=0.974226

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               388-496, - strand, RNAmicro p=0.974226

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               109-255, gnl|bosTau2|chr13 (47106056-47105910)
               

               
               109-255, gnl|Hg17|chr20 (31137632-31137486)
               

               
               109-255, gnl|Mm7|chr2 (153685720-153685574)
               


               
               358-576, gnl|bosTau2|chr13 (47104102-47103884)
               

               
               358-576, gnl|Hg17|chr20 (31135342-31135124)
               

               
               358-576, gnl|Mm7|chr2 (153683915-153683697)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-255, gnl|bosTau2|chr13 (47106056-47105910)
               

               
               109-255, gnl|Hg17|chr20 (31137632-31137486)
               

               
               109-255, gnl|Mm7|chr2 (153685720-153685574)
               


               
               358-576, gnl|bosTau2|chr13 (47104102-47103884)
               

               
               358-576, gnl|Hg17|chr20 (31135342-31135124)
               

               
               358-576, gnl|Mm7|chr2 (153683915-153683697)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.664011)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.664011)

	109-255, gnl\|bosTau2\|chr13 (47106056-47105910)
	109-255, gnl\|Hg17\|chr20 (31137632-31137486)
	109-255, gnl\|Mm7\|chr2 (153685720-153685574)

	358-576, gnl\|bosTau2\|chr13 (47104102-47103884)
	358-576, gnl\|Hg17\|chr20 (31135342-31135124)
	358-576, gnl\|Mm7\|chr2 (153683915-153683697)