Ss1.1-rnmm22c_m6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCAGCGCGCTGCCCGGATCGTGCGGGGCCCGAACCTCTCCGCCGGCGCAGGCTCCCTC GCGCCAGCTCCCTCCCGCCGCCATGTCGGCCGCCATCGAGCGGGAGTTTGAGGAGTTGGA CGCTCAGAATCGCTGGCAGCAGCTATACCTGGAAATTCGCAGTGAGTCCCACGACTATCC TCATAGAGTGGCCAAGTTTCCAGAAAACAGAAATCGGAACAGATACAGAGATGTAAGCCC ATATGATCATAGTCGTGTTAAACTGCAGAATGTTGAAAATGATTATATTAACGCCAGCTT GGTTGACATAGCAGAGGCTCGGAGGAGTTACATCTTAACACAGGGTCCGCTTCCTAATAC AGGTTGTCATTTCTGGCTCATGGTTTGGCAGCAAAAGACCAAAGCAGTTGTCATGCTGAA CCGAGTTGTGGAGAAAGAATCGGTTAAATGTGCACAGTACTGGCCGACAAAAGACAGCCG AGAAATGCTGTTTAAGGAAACGGGATTCAGTGTGAAGTTCCTGTCAGAAGACGTGAAGTC CTATTACACAGTCCATCTACTGCAGTTAGGAAACACCAATAGTGGTGAAACCAGAACAAT ATCTCACTTTCATTATACTACCTGGCCAGATTTCGGAGTCCCCGAATCACCAGCTTCATT TCTCAATTTCTTATTTAAAGTGCGAGAGTCTGGCTCCCTGGATCCTGAGCATGGGCCTGC GGTGATCCACTGTAGTGCCGGCATCGGGCGGTCAGGCACCTTTTCTCTGGTGGACACCTG TCTCGTCCTGATGGAAAAAGGAGATGATATTAACATTAAACAACTGTTGCTGAATATGAG ACAGTACCGAATGGGGCTGATTCAGACACCAGATCAACTCAGATTTTCATATATGACTAT AATAGAAGGAGCAAAATTTATAAAAGGAGATTCAAATATACAGAAACGATGGAAAGAGCT TTCTAAGGAAGACGTCTGTCCTGTTTTTGATCATTCACCAACCAAAATAATGACTGAAAA ATACAATGGGAACAGGATAGGCCTAGAAGAAGAAAAACTGACAGGGGACAGGTGCACAGG GCTGTCCTCTAAAATGCAGGATGCTGTGGAGGACAACAGCGAGAGTGCCCTGCGGAAGCG CATTCGAGAGGACAGGAGAGCCGGCACAGCTCAGAAGGTGCAGCAGATGAAGCAGAGGCT CAACGAGACCGAGCGAAAGAGGAAAAGGCCAAGATTGACAGACACCTAAATATTCATGAC TTGAGAATATTCTGCAGCTATAAATTTTGAACCATTGATGTGCAAAGCAAGACCTGAAGC CCACTCCGGAAATTAAGTGAGGCTTGATAAGCCTGTAGATTGCCTCACACTTGTCTGTTT ACAAAGTAAACCTTACATCCAGGGAACGAAGAGCACCACCAGCAGAAGACTTTGCAGAAC CCTCTAATTTGATGCATTGTTAAATTTTTTTAATGCGTGTGTGAAATGTAGAAAGATGTA AAAGAAATAAATTAGAGAGACTACTTTGTATTGTACTGCCATTCCTACTGTATTTTTATA CTTTTTGGCAGCATTAAATATTTTTATTAAATAGAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCAGCGCGCTGCCCGGATCGTGCGGGGCCCGAACCTCTCCGCCGGCGCAGGCTCCCTC GCGCCAGCTCCCTCCCGCCGCCATGTCGGCCGCCATCGAGCGGGAGTTTGAGGAGTTGGA CGCTCAGAATCGCTGGCAGCAGCTATACCTGGAAATTCGCAGTGAGTCCCACGACTATCC TCATAGAGTGGCCAAGTTTCCAGAAAACAGAAATCGGAACAGATACAGAGATGTAAGCCC ATATGATCATAGTCGTGTTAAACTGCAGAATGTTGAAAATGATTATATTAACGCCAGCTT GGTTGACATAGCAGAGGCTCGGAGGAGTTACATCTTAACACAGGGTCCGCTTCCTAATAC AGGTTGTCATTTCTGGCTCATGGTTTGGCAGCAAAAGACCAAAGCAGTTGTCATGCTGAA CCGAGTTGTGGAGAAAGAATCGGTTAAATGTGCACAGTACTGGCCGACAAAAGACAGCCG AGAAATGCTGTTTAAGGAAACGGGATTCAGTGTGAAGTTCCTGTCAGAAGACGTGAAGTC CTATTACACAGTCCATCTACTGCAGTTAGGAAACACCAATAGTGGTGAAACCAGAACAAT ATCTCACTTTCATTATACTACCTGGCCAGATTTCGGAGTCCCCGAATCACCAGCTTCATT TCTCAATTTCTTATTTAAAGTGCGAGAGTCTGGCTCCCTGGATCCTGAGCATGGGCCTGC GGTGATCCACTGTAGTGCCGGCATCGGGCGGTCAGGCACCTTTTCTCTGGTGGACACCTG TCTCGTCCTGATGGAAAAAGGAGATGATATTAACATTAAACAACTGTTGCTGAATATGAG ACAGTACCGAATGGGGCTGATTCAGACACCAGATCAACTCAGATTTTCATATATGACTAT AATAGAAGGAGCAAAATTTATAAAAGGAGATTCAAATATACAGAAACGATGGAAAGAGCT TTCTAAGGAAGACGTCTGTCCTGTTTTTGATCATTCACCAACCAAAATAATGACTGAAAA ATACAATGGGAACAGGATAGGCCTAGAAGAAGAAAAACTGACAGGGGACAGGTGCACAGG GCTGTCCTCTAAAATGCAGGATGCTGTGGAGGACAACAGCGAGAGTGCCCTGCGGAAGCG CATTCGAGAGGACAGGAGAGCCGGCACAGCTCAGAAGGTGCAGCAGATGAAGCAGAGGCT CAACGAGACCGAGCGAAAGAGGAAAAGGCCAAGATTGACAGACACCTAAATATTCATGAC TTGAGAATATTCTGCAGCTATAAATTTTGAACCATTGATGTGCAAAGCAAGACCTGAAGC CCACTCCGGAAATTAAGTGAGGCTTGATAAGCCTGTAGATTGCCTCACACTTGTCTGTTT ACAAAGTAAACCTTACATCCAGGGAACGAAGAGCACCACCAGCAGAAGACTTTGCAGAAC CCTCTAATTTGATGCATTGTTAAATTTTTTTAATGCGTGTGTGAAATGTAGAAAGATGTA AAAGAAATAAATTAGAGAGACTACTTTGTATTGTACTGCCATTCCTACTGTATTTTTATA CTTTTTGGCAGCATTAAATATTTTTATTAAATAGAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 88 entry(ies) | More info |
| Aligned organism(s): 88 entry(ies) | Help | Less info |
| 1-152, gnl|bosTau2|chr24 (31195763-31195612) | |
| 1-152, gnl|Hg17|chr18 (12874223-12874071) | |
| 1-152, gnl|Mm7|chr18 (68116881-68116736) | |
| 240-344, gnl|bosTau2|chr24 (31161757-31161653) | |
| 240-344, gnl|canFam2|chr7 (81244193-81244296) | |
| 240-344, gnl|canFam2|chr7 (81244299-81244203) | |
| 240-344, gnl|danRer3|chr12 (16317047-16317150) | |
| 240-344, gnl|danRer3|chr19 (40581630-40581441) | |
| 240-344, gnl|dasNov1|scaffold_291386 (726-632) | |
| 240-344, gnl|dasNov1|scaffold_4579 (38658-38761) | |
| 240-344, gnl|echTel1|scaffold_187339 (556-659) | |
| 240-344, gnl|echTel1|scaffold_291479 (9067-8971) | |
| 240-344, gnl|fr1|chrUn (139762431-139762328) | |
| 240-344, gnl|fr1|chrUn (139762235-139762448) | |
| 240-344, gnl|galGal2|chr2 (96658891-96658994) | |
| 240-344, gnl|galGal2|chr2 (96658997-96658903) | |
| 240-344, gnl|hg17|chr13 (30025969-30026065) | |
| 240-344, gnl|hg17|chr18 (12826785-12826888) | |
| 240-344, gnl|Hg17|chr18 (12826893-12826789) | |
| 240-344, gnl|loxAfr1|scaffold_53419 (7321-7417) | |
| 240-344, gnl|loxAfr1|scaffold_61436 (5155-5258) | |
| 240-344, gnl|mm7|chr18 (68087914-68088017) | |
| 240-344, gnl|Mm7|chr18 (68088022-68087918) | |
| 240-344, gnl|mm7|chr2 (167757666-167757761) | |
| 240-344, gnl|monDom2|scaffold_21 (18969998-18969895) | |
| 240-344, gnl|monDom2|scaffold_6 (31304851-31304832) | |
| 240-344, gnl|oryCun1|scaffold_138513 (6188-6278) | |
| 240-344, gnl|oryCun1|scaffold_142969 (9727-9624) | |
| 240-344, gnl|panTro1|chr14 (29229748-29229844) | |
| 240-344, gnl|panTro1|chr17_random (4807874-4807771) | |
| 240-344, gnl|rheMac2|chr17 (9995968-9996064) | |
| 240-344, gnl|rheMac2|chr18 (1895467-1895364) | |
| 240-344, gnl|rn3|chr10 (79857573-79857480) | |
| 240-344, gnl|rn3|chr18 (64310897-64311000) | |
| 240-344, gnl|tetNig1|chr21 (1626357-1626535) | |
| 240-344, gnl|tetNig1|chr8 (10174194-10174297) | |
| 240-344, gnl|xenTro1|scaffold_202 (1280539-1280436) | |
| 240-344, gnl|xenTro1|scaffold_202 (1280433-1280529) | |
| 442-578, gnl|bosTau2|chr24 (31150637-31150501) | |
| 442-578, gnl|canFam2|chr7 (81234576-81234480) | |
| 442-578, gnl|danRer3|chr19 (40576864-40576772) | |
| 442-578, gnl|dasNov1|scaffold_291386 (531-435) | |
| 442-578, gnl|echTel1|scaffold_291479 (8868-8772) | |
| 442-578, gnl|fr1|chrUn (139762718-139762810) | |
| 442-578, gnl|galGal2|chr2 (96656880-96656784) | |
| 442-578, gnl|hg17|chr13 (30026168-30026260) | |
| 442-578, gnl|Hg17|chr18 (12815944-12815811) | |
| 442-578, gnl|loxAfr1|scaffold_53419 (7520-7615) | |
| 442-578, gnl|mm7|chr18 (68073874-68073781) | |
| 442-578, gnl|Mm7|chr18 (68073873-68073740) | |
| 442-578, gnl|monDom2|scaffold_6 (31304734-31304638) | |
| 442-578, gnl|oryCun1|scaffold_138513 (6381-6485) | |
| 442-578, gnl|panTro1|chr14 (29229947-29230039) | |
| 442-578, gnl|rheMac2|chr17 (9996167-9996260) | |
| 442-578, gnl|rn3|chr18 (64298190-64298097) | |
| 442-578, gnl|tetNig1|chr21 (1627182-1627274) | |
| 442-578, gnl|xenTro1|scaffold_202 (1286855-1286951) | |
| 587-790, gnl|bosTau2|chr13 (60083167-60082964) | |
| 587-790, gnl|Hg17|chr20 (48628370-48628573) | |
| 587-790, gnl|Mm7|chr2 (167766720-167766923) | |
| 937-1125, gnl|bosTau2|chr24 (31138314-31138126) | |
| 937-1125, gnl|canFam2|chr7 (81218304-81218456) | |
| 937-1125, gnl|canFam2|chr7 (81218290-81218506) | |
| 937-1125, gnl|echTel1|scaffold_266617 (11534-11316) | |
| 937-1125, gnl|echTel1|scaffold_291479 (8199-8350) | |
| 937-1125, gnl|galGal2|chr2 (96641220-96641381) | |
| 937-1125, gnl|galGal2|chr2 (96641215-96641429) | |
| 937-1125, gnl|hg17|chr1 (175447600-175447751) | |
| 937-1125, gnl|hg17|chr18 (12791956-12792172) | |
| 937-1125, gnl|Hg17|chr18 (12792157-12791969) | |
| 937-1125, gnl|loxAfr1|scaffold_53419 (8202-8050) | |
| 937-1125, gnl|loxAfr1|scaffold_53419 (8202-8019) | |
| 937-1125, gnl|mm7|chr18 (68068016-68068153) | |
| 937-1125, gnl|mm7|chr18 (68068002-68068203) | |
| 937-1125, gnl|Mm7|chr18 (68068188-68068015) | |
| 937-1125, gnl|monDom2|scaffold_21 (19025657-19025433) | |
| 937-1125, gnl|monDom2|scaffold_6 (31303277-31303441) | |
| 937-1125, gnl|oryCun1|scaffold_131042 (25410-25631) | |
| 937-1125, gnl|oryCun1|scaffold_138513 (7356-7216) | |
| 937-1125, gnl|panTro1|chr1 (157854419-157854570) | |
| 937-1125, gnl|panTro1|chr17_random (4845931-4845715) | |
| 937-1125, gnl|rheMac2|chr1 (191969615-191969462) | |
| 937-1125, gnl|rheMac2|chr18 (1929610-1929394) | |
| 937-1125, gnl|rn3|chr18 (64289714-64289851) | |
| 937-1125, gnl|rn3|chr18 (64289708-64289901) | |
| 1226-1595, gnl|bosTau2|chr24 (31127956-31127587) | |
| 1226-1595, gnl|Hg17|chr18 (12775845-12775477) | |
| 1226-1595, gnl|Mm7|chr18 (68058171-68057807) |
| Aligned organism(s): 88 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-152, gnl|bosTau2|chr24 (31195763-31195612) | |
| 1-152, gnl|Hg17|chr18 (12874223-12874071) | |
| 1-152, gnl|Mm7|chr18 (68116881-68116736) | |
| 240-344, gnl|bosTau2|chr24 (31161757-31161653) | |
| 240-344, gnl|canFam2|chr7 (81244193-81244296) | |
| 240-344, gnl|canFam2|chr7 (81244299-81244203) | |
| 240-344, gnl|danRer3|chr12 (16317047-16317150) | |
| 240-344, gnl|danRer3|chr19 (40581630-40581441) | |
| 240-344, gnl|dasNov1|scaffold_291386 (726-632) | |
| 240-344, gnl|dasNov1|scaffold_4579 (38658-38761) | |
| 240-344, gnl|echTel1|scaffold_187339 (556-659) | |
| 240-344, gnl|echTel1|scaffold_291479 (9067-8971) | |
| 240-344, gnl|fr1|chrUn (139762431-139762328) | |
| 240-344, gnl|fr1|chrUn (139762235-139762448) | |
| 240-344, gnl|galGal2|chr2 (96658891-96658994) | |
| 240-344, gnl|galGal2|chr2 (96658997-96658903) | |
| 240-344, gnl|hg17|chr13 (30025969-30026065) | |
| 240-344, gnl|hg17|chr18 (12826785-12826888) | |
| 240-344, gnl|Hg17|chr18 (12826893-12826789) | |
| 240-344, gnl|loxAfr1|scaffold_53419 (7321-7417) | |
| 240-344, gnl|loxAfr1|scaffold_61436 (5155-5258) | |
| 240-344, gnl|mm7|chr18 (68087914-68088017) | |
| 240-344, gnl|Mm7|chr18 (68088022-68087918) | |
| 240-344, gnl|mm7|chr2 (167757666-167757761) | |
| 240-344, gnl|monDom2|scaffold_21 (18969998-18969895) | |
| 240-344, gnl|monDom2|scaffold_6 (31304851-31304832) | |
| 240-344, gnl|oryCun1|scaffold_138513 (6188-6278) | |
| 240-344, gnl|oryCun1|scaffold_142969 (9727-9624) | |
| 240-344, gnl|panTro1|chr14 (29229748-29229844) | |
| 240-344, gnl|panTro1|chr17_random (4807874-4807771) | |
| 240-344, gnl|rheMac2|chr17 (9995968-9996064) | |
| 240-344, gnl|rheMac2|chr18 (1895467-1895364) | |
| 240-344, gnl|rn3|chr10 (79857573-79857480) | |
| 240-344, gnl|rn3|chr18 (64310897-64311000) | |
| 240-344, gnl|tetNig1|chr21 (1626357-1626535) | |
| 240-344, gnl|tetNig1|chr8 (10174194-10174297) | |
| 240-344, gnl|xenTro1|scaffold_202 (1280539-1280436) | |
| 240-344, gnl|xenTro1|scaffold_202 (1280433-1280529) | |
| 442-578, gnl|bosTau2|chr24 (31150637-31150501) | |
| 442-578, gnl|canFam2|chr7 (81234576-81234480) | |
| 442-578, gnl|danRer3|chr19 (40576864-40576772) | |
| 442-578, gnl|dasNov1|scaffold_291386 (531-435) | |
| 442-578, gnl|echTel1|scaffold_291479 (8868-8772) | |
| 442-578, gnl|fr1|chrUn (139762718-139762810) | |
| 442-578, gnl|galGal2|chr2 (96656880-96656784) | |
| 442-578, gnl|hg17|chr13 (30026168-30026260) | |
| 442-578, gnl|Hg17|chr18 (12815944-12815811) | |
| 442-578, gnl|loxAfr1|scaffold_53419 (7520-7615) | |
| 442-578, gnl|mm7|chr18 (68073874-68073781) | |
| 442-578, gnl|Mm7|chr18 (68073873-68073740) | |
| 442-578, gnl|monDom2|scaffold_6 (31304734-31304638) | |
| 442-578, gnl|oryCun1|scaffold_138513 (6381-6485) | |
| 442-578, gnl|panTro1|chr14 (29229947-29230039) | |
| 442-578, gnl|rheMac2|chr17 (9996167-9996260) | |
| 442-578, gnl|rn3|chr18 (64298190-64298097) | |
| 442-578, gnl|tetNig1|chr21 (1627182-1627274) | |
| 442-578, gnl|xenTro1|scaffold_202 (1286855-1286951) | |
| 587-790, gnl|bosTau2|chr13 (60083167-60082964) | |
| 587-790, gnl|Hg17|chr20 (48628370-48628573) | |
| 587-790, gnl|Mm7|chr2 (167766720-167766923) | |
| 937-1125, gnl|bosTau2|chr24 (31138314-31138126) | |
| 937-1125, gnl|canFam2|chr7 (81218304-81218456) | |
| 937-1125, gnl|canFam2|chr7 (81218290-81218506) | |
| 937-1125, gnl|echTel1|scaffold_266617 (11534-11316) | |
| 937-1125, gnl|echTel1|scaffold_291479 (8199-8350) | |
| 937-1125, gnl|galGal2|chr2 (96641220-96641381) | |
| 937-1125, gnl|galGal2|chr2 (96641215-96641429) | |
| 937-1125, gnl|hg17|chr1 (175447600-175447751) | |
| 937-1125, gnl|hg17|chr18 (12791956-12792172) | |
| 937-1125, gnl|Hg17|chr18 (12792157-12791969) | |
| 937-1125, gnl|loxAfr1|scaffold_53419 (8202-8050) | |
| 937-1125, gnl|loxAfr1|scaffold_53419 (8202-8019) | |
| 937-1125, gnl|mm7|chr18 (68068016-68068153) | |
| 937-1125, gnl|mm7|chr18 (68068002-68068203) | |
| 937-1125, gnl|Mm7|chr18 (68068188-68068015) | |
| 937-1125, gnl|monDom2|scaffold_21 (19025657-19025433) | |
| 937-1125, gnl|monDom2|scaffold_6 (31303277-31303441) | |
| 937-1125, gnl|oryCun1|scaffold_131042 (25410-25631) | |
| 937-1125, gnl|oryCun1|scaffold_138513 (7356-7216) | |
| 937-1125, gnl|panTro1|chr1 (157854419-157854570) | |
| 937-1125, gnl|panTro1|chr17_random (4845931-4845715) | |
| 937-1125, gnl|rheMac2|chr1 (191969615-191969462) | |
| 937-1125, gnl|rheMac2|chr18 (1929610-1929394) | |
| 937-1125, gnl|rn3|chr18 (64289714-64289851) | |
| 937-1125, gnl|rn3|chr18 (64289708-64289901) | |
| 1226-1595, gnl|bosTau2|chr24 (31127956-31127587) | |
| 1226-1595, gnl|Hg17|chr18 (12775845-12775477) | |
| 1226-1595, gnl|Mm7|chr18 (68058171-68057807) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| tbr (0.616713) | |
| liv (0.438853) | |
| rec (0.346141) | |
| cte (0.29274) | |
| med (0.232504) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| fty (0.17584) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| cag (0.151194) | |
| isp (0.150376) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| spc (0.113366) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.616713) | |
| liv (0.438853) | |
| rec (0.346141) | |
| cte (0.29274) | |
| med (0.232504) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| fty (0.17584) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| cag (0.151194) | |
| isp (0.150376) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| spc (0.113366) |