Non-Coding RNA Search

Ss1.1-rnmm23c_i9.5

Sequence:


               
               AAAGAAAAAAAAGAAAAAAGAAAAAGAAAGAAGAAGAAAAAGAAACAAACAAAAATTTCC
TCCTTAAGAACTAGGAGTGGTCTCTTGAGACTGTTTTGCTGGATTTGGTAGACTGCTATG
TGCAAAGATCACATTCTTGAGGTTGTGGTCGTGCTAAAGGGGTAAGAACAGAGGAAGAGG
AAAGATTCTGAACAAAGAAGATTTAAGTTGACTAGCAGGGAGAAAAATCTTCACAGAGGA
GTCTGTAAATTCAAGAGAAGTGGTGGGAGTCCTCACTGGAATACTTGGAGAAGAACTACA
CAGAATAACAGAGGCCCTTCTGTGGGGAACCATCTCAAGTTGGCAGTTGCTCAGACAAGT
CCACCCACCGGGACCAGAGGCACTTACAGGCTCCATGGCTCTCTGAGCTTCTGGTAAGTA
CTCCCTGCCTACCATCTCTCAGGAAAATGGCCTGCGAGCCCCTAAGTCCTTCTCATGCAA
CAGATTCCCACCCGTGCTCTGTTGCACCTGAAACTGAGCAAGCATGAGAACCCTTGAAAA
GAATCCTATGAGCTCATTGATTTTATCCATACAGATATCTTCTTTTCTTCACAAAATATT
TGTACAAAAGTAGCATTTCCATCCCCTGTCATCAGCTAATAAATCTAGTATTTTCTTAGG
GTTCTATTCATT------------ATATTGCCGGGACTGCTTCTTTGTACCCCTCCCCAC
ACATATCTTTCACTTCATCCATAGAAAATTGAAGCACAGTGTTTGATGGGACACAGGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAAAAAAAAGAAAAAAGAAAAAGAAAGAAGAAGAAAAAGAAACAAACAAAAATTTCC
TCCTTAAGAACTAGGAGTGGTCTCTTGAGACTGTTTTGCTGGATTTGGTAGACTGCTATG
TGCAAAGATCACATTCTTGAGGTTGTGGTCGTGCTAAAGGGGTAAGAACAGAGGAAGAGG
AAAGATTCTGAACAAAGAAGATTTAAGTTGACTAGCAGGGAGAAAAATCTTCACAGAGGA
GTCTGTAAATTCAAGAGAAGTGGTGGGAGTCCTCACTGGAATACTTGGAGAAGAACTACA
CAGAATAACAGAGGCCCTTCTGTGGGGAACCATCTCAAGTTGGCAGTTGCTCAGACAAGT
CCACCCACCGGGACCAGAGGCACTTACAGGCTCCATGGCTCTCTGAGCTTCTGGTAAGTA
CTCCCTGCCTACCATCTCTCAGGAAAATGGCCTGCGAGCCCCTAAGTCCTTCTCATGCAA
CAGATTCCCACCCGTGCTCTGTTGCACCTGAAACTGAGCAAGCATGAGAACCCTTGAAAA
GAATCCTATGAGCTCATTGATTTTATCCATACAGATATCTTCTTTTCTTCACAAAATATT
TGTACAAAAGTAGCATTTCCATCCCCTGTCATCAGCTAATAAATCTAGTATTTTCTTAGG
GTTCTATTCATT------------ATATTGCCGGGACTGCTTCTTTGTACCCCTCCCCAC
ACATATCTTTCACTTCATCCATAGAAAATTGAAGCACAGTGTTTGATGGGACACAGGTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               224-343, + strand, RNAz p=0.967734

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               224-343, + strand, RNAz p=0.967734

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               27-619, gnl|bosTau2|chr9 (47535633-47535056)
               

               
               27-619, gnl|Hg17|chr6 (144592048-144592592)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-619, gnl|bosTau2|chr9 (47535633-47535056)
               

               
               27-619, gnl|Hg17|chr6 (144592048-144592592)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	27-619, gnl\|bosTau2\|chr9 (47535633-47535056)
	27-619, gnl\|Hg17\|chr6 (144592048-144592592)