Non-Coding RNA Search

Ss1.1-rnmm23c_o18.5

Sequence:


               
               ACCAAGTGCGCTGCTTGGAAGGGGAGCCCAATCCTTCTGCAGCCCCGACATCTACCTTAG
CACCTAGGAAAATGCCCAAAAGAATTTCAGTATCCAAACAACTGGCTTCAATAAAAGCTC
TGCGCAAGGGCTCAGATCTGGAAAAAGCCATCGCTACTGCTGCTCTGATTTTCAGAAACT
CTTCTGACCTTGACGGCAAACTTGGAAAAACTACTGCCAAAAACCTGCTGCGAACCCAAT
TCAGGAATTTCACAGAGGGACAAGAAACCAAACCAAGATACAAAGACCTCCTTTCTGAAC
TCGATGAGCATACAGAAAATAAGCTGGATTTTGAGGATTTCATGATCTTACTGTTAAGCA
TCACTGTAATGTCAGATCTGCTACAAGATATATGGAGTGTGAAAGTTAGGCAATAAACAG
CTTTAAATATATAGTTAGATAAGTGAATGGCAAATGCCAGTGTTAAGTGATTAAAAATTT
TTCTCATTTTTAATTAACTGAAGGTACCCAGCATGTTCTATGGTTGCTTGGGATGGTTCT
GATTGCTGATATTCAGACCCAGTACAACTATATAAAACAAAAAAAAACCTATGCCAACTC
TTCACGAATGTTTAAATAATGCAGCCTCTGGTGTTTTACAATATGATAGGTGTCATATAT
CGCTGAATATTACATTGCTTTTGCTGAGTCAGTAATGTCTTACAGCACTTTTTATTATAG
TCCTTACAGCCACTCACTCGATCATTCATTCACTTATTAAACAATATTACTAAGCCTCTC
CTTGATGGTATTGCTGAGAATACAGTAATGAACCAGCTAATCCGTGCCCTCACACATGCC
TGCAGAAGTCCAGCAGAAGAGATAGACTACAAGCAAATTATCAATCAATTGTACATACAG
TGTAATTGTGATAAGGTCTCCAGGAAGCTAAGAGAGCTGTTATCACTGACCTAGGATCAA
AGGTCAGAAAAGCTCTACTTACATTCTGCAAAAGACAGAATTATTGGGGGGAAAACATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAAGTGCGCTGCTTGGAAGGGGAGCCCAATCCTTCTGCAGCCCCGACATCTACCTTAG
CACCTAGGAAAATGCCCAAAAGAATTTCAGTATCCAAACAACTGGCTTCAATAAAAGCTC
TGCGCAAGGGCTCAGATCTGGAAAAAGCCATCGCTACTGCTGCTCTGATTTTCAGAAACT
CTTCTGACCTTGACGGCAAACTTGGAAAAACTACTGCCAAAAACCTGCTGCGAACCCAAT
TCAGGAATTTCACAGAGGGACAAGAAACCAAACCAAGATACAAAGACCTCCTTTCTGAAC
TCGATGAGCATACAGAAAATAAGCTGGATTTTGAGGATTTCATGATCTTACTGTTAAGCA
TCACTGTAATGTCAGATCTGCTACAAGATATATGGAGTGTGAAAGTTAGGCAATAAACAG
CTTTAAATATATAGTTAGATAAGTGAATGGCAAATGCCAGTGTTAAGTGATTAAAAATTT
TTCTCATTTTTAATTAACTGAAGGTACCCAGCATGTTCTATGGTTGCTTGGGATGGTTCT
GATTGCTGATATTCAGACCCAGTACAACTATATAAAACAAAAAAAAACCTATGCCAACTC
TTCACGAATGTTTAAATAATGCAGCCTCTGGTGTTTTACAATATGATAGGTGTCATATAT
CGCTGAATATTACATTGCTTTTGCTGAGTCAGTAATGTCTTACAGCACTTTTTATTATAG
TCCTTACAGCCACTCACTCGATCATTCATTCACTTATTAAACAATATTACTAAGCCTCTC
CTTGATGGTATTGCTGAGAATACAGTAATGAACCAGCTAATCCGTGCCCTCACACATGCC
TGCAGAAGTCCAGCAGAAGAGATAGACTACAAGCAAATTATCAATCAATTGTACATACAG
TGTAATTGTGATAAGGTCTCCAGGAAGCTAAGAGAGCTGTTATCACTGACCTAGGATCAA
AGGTCAGAAAAGCTCTACTTACATTCTGCAAAAGACAGAATTATTGGGGGGAAAACATAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57101512|ref|XP_541819.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57101512|ref|XP_541819.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               448-562, + strand, RNAz p=0.907815

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               448-562, + strand, RNAz p=0.907815

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               249-1020, gnl|bosTau2|chr22 (28469104-28468345)
               

               
               249-1020, gnl|Hg17|chr3 (63624644-63625385)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               249-1020, gnl|bosTau2|chr22 (28469104-28468345)
               

               
               249-1020, gnl|Hg17|chr3 (63624644-63625385)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nmm (0.265604)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               liv (0.146284)
               

               
               ova (0.129132)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               liv (0.146284)
               

               
               ova (0.129132)

	249-1020, gnl\|bosTau2\|chr22 (28469104-28468345)
	249-1020, gnl\|Hg17\|chr3 (63624644-63625385)

	nmm (0.265604)
	tra (0.246184)
	cmu (0.186393)
	liv (0.146284)
	ova (0.129132)