Ss1.1-rnmm24c_l4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATGAGCTCCAGAGGCCGGCAGTGAGAGGGGGCGATACTGACCAGACGCAGCACCGGCG GGGCCATGGCTGGACGCCAGAAGGAGAAGGTGATCAGAGACGAGGTCCACCAGAACCAGA TCCTGCGAGAACTGTACCTCAAAGAGCTACGAACCCAGATACTCTACACTCAGTATCACG TGAATCCACTCCGCAAGGTTCATACAATCGCCAGAAAGCCCATGTCTTGGCATGACAACC TGGAGGAACCTGAAGATGCCAGGTTTCTAAATCTCATTCACCACGCCGCCCAGGGACCAA GGAAGAAGTACCCGGAGACGCAGACTGAAAGCCAAGAGATTGGATGGGACTCAGAGCCCT TGGTGGTCTCAGGCATGTACGTCCCTTACATCTACAAATCTTGTCCCTTTCTCTGGAAAA CGGCAACGACAGGAACAGTACTCACGTTGACTGGAAGCACCCCGAAGTGCGGGCCGCCTG GGAAATGGGGTCTTCAGCACACGTCTCCTTGCATGACCGAGGGCTTCTGTGCCTGAGGAA GGAAAGCATGAGTTTGAACAGACAACTTGAACAGCGTCCCAGCACACTTGTCTTTTAACT CAGATTATGTCTTTCCTCACACAGAGGGTTTTTAATTGGGGGAGGGGGCGGGCATACCCA TGGCCTTTGGAAGTTCCAGGGCCAGGGGTCAAACCCACACCACAGCCGGCACCTGCGCCA CCGCTGTGGCAACGCTGCATGAACCCGCTGTGCCACCGGGAACGTCCAGATTTTAATTTT TAAGTAGTCGAAAGCACCAGTCTCTTCCATTATGACTTCGTACCTTGCTTCAAGAAAGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATGAGCTCCAGAGGCCGGCAGTGAGAGGGGGCGATACTGACCAGACGCAGCACCGGCG GGGCCATGGCTGGACGCCAGAAGGAGAAGGTGATCAGAGACGAGGTCCACCAGAACCAGA TCCTGCGAGAACTGTACCTCAAAGAGCTACGAACCCAGATACTCTACACTCAGTATCACG TGAATCCACTCCGCAAGGTTCATACAATCGCCAGAAAGCCCATGTCTTGGCATGACAACC TGGAGGAACCTGAAGATGCCAGGTTTCTAAATCTCATTCACCACGCCGCCCAGGGACCAA GGAAGAAGTACCCGGAGACGCAGACTGAAAGCCAAGAGATTGGATGGGACTCAGAGCCCT TGGTGGTCTCAGGCATGTACGTCCCTTACATCTACAAATCTTGTCCCTTTCTCTGGAAAA CGGCAACGACAGGAACAGTACTCACGTTGACTGGAAGCACCCCGAAGTGCGGGCCGCCTG GGAAATGGGGTCTTCAGCACACGTCTCCTTGCATGACCGAGGGCTTCTGTGCCTGAGGAA GGAAAGCATGAGTTTGAACAGACAACTTGAACAGCGTCCCAGCACACTTGTCTTTTAACT CAGATTATGTCTTTCCTCACACAGAGGGTTTTTAATTGGGGGAGGGGGCGGGCATACCCA TGGCCTTTGGAAGTTCCAGGGCCAGGGGTCAAACCCACACCACAGCCGGCACCTGCGCCA CCGCTGTGGCAACGCTGCATGAACCCGCTGTGCCACCGGGAACGTCCAGATTTTAATTTT TAAGTAGTCGAAAGCACCAGTCTCTTCCATTATGACTTCGTACCTTGCTTCAAGAAAGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 84 entry(ies) | More info |
| Aligned organism(s): 84 entry(ies) | Help | Less info |
| 23-198, gnl|bosTau2|chr3 (72093831-72093656) | |
| 23-198, gnl|canFam2|chr15 (20008047-20007799) | |
| 23-198, gnl|canFam2|chr15 (20007799-20008082) | |
| 23-198, gnl|canFam2|chr15 (20007799-20007932) | |
| 23-198, gnl|canFam2|chr15 (20007799-20008004) | |
| 23-198, gnl|dasNov1|scaffold_38998 (11758-11519) | |
| 23-198, gnl|dasNov1|scaffold_38998 (11518-11752) | |
| 23-198, gnl|dasNov1|scaffold_38998 (11518-11652) | |
| 23-198, gnl|dasNov1|scaffold_38998 (11518-11711) | |
| 23-198, gnl|echTel1|scaffold_214193 (1123-1376) | |
| 23-198, gnl|echTel1|scaffold_214193 (1375-1121) | |
| 23-198, gnl|echTel1|scaffold_214193 (1375-1242) | |
| 23-198, gnl|echTel1|scaffold_214193 (1375-1168) | |
| 23-198, gnl|Hg17|chr1 (43282688-43282848) | |
| 23-198, gnl|hg17|chr1_random (1768535-1768668) | |
| 23-198, gnl|hg17|chr2 (102325103-102325374) | |
| 23-198, gnl|hg17|chr7 (38498714-38498923) | |
| 23-198, gnl|hg17|chr8 (29898550-29898790) | |
| 23-198, gnl|mm7|chr11 (58883580-58883306) | |
| 23-198, gnl|mm7|chr11 (58883307-58883565) | |
| 23-198, gnl|mm7|chr11 (58883307-58883441) | |
| 23-198, gnl|mm7|chr11 (58883307-58883510) | |
| 23-198, gnl|Mm7|chr11 (58883472-58883306) | |
| 23-198, gnl|oryCun1|scaffold_177089 (8321-8039) | |
| 23-198, gnl|oryCun1|scaffold_177089 (8040-8339) | |
| 23-198, gnl|oryCun1|scaffold_177089 (8043-8171) | |
| 23-198, gnl|oryCun1|scaffold_177089 (8036-8276) | |
| 23-198, gnl|panTro1|chr1 (202516328-202516461) | |
| 23-198, gnl|panTro1|chr12_random (1346073-1346347) | |
| 23-198, gnl|panTro1|chr1_random (63550863-63550646) | |
| 23-198, gnl|panTro1|chr6 (39700768-39700977) | |
| 23-198, gnl|rheMac2|chr1 (148047649-148047516) | |
| 23-198, gnl|rheMac2|chr13 (102182625-102182895) | |
| 23-198, gnl|rheMac2|chr3 (87582011-87581802) | |
| 23-198, gnl|rheMac2|chr8 (30144076-30144315) | |
| 23-198, gnl|rn3|chr10 (45045830-45045557) | |
| 23-198, gnl|rn3|chr10 (45045558-45045815) | |
| 23-198, gnl|rn3|chr10 (45045558-45045692) | |
| 23-198, gnl|rn3|chr10 (45045558-45045762) | |
| 258-364, gnl|bosTau2|chr3 (72086903-72086797) | |
| 258-364, gnl|canFam2|chr15 (20004565-20004422) | |
| 258-364, gnl|canFam2|chr16 (4739097-4738992) | |
| 258-364, gnl|canFam2|chr16 (4292242-4292337) | |
| 258-364, gnl|canFam2|chr16 (4292236-4292337) | |
| 258-364, gnl|dasNov1|scaffold_38998 (7051-6915) | |
| 258-364, gnl|dasNov1|scaffold_38998 (7084-6941) | |
| 258-364, gnl|dasNov1|scaffold_38998 (6951-7050) | |
| 258-364, gnl|dasNov1|scaffold_38998 (6945-7050) | |
| 258-364, gnl|echTel1|scaffold_214193 (6654-6773) | |
| 258-364, gnl|echTel1|scaffold_214193 (6621-6764) | |
| 258-364, gnl|echTel1|scaffold_214193 (6755-6671) | |
| 258-364, gnl|echTel1|scaffold_214193 (6757-6655) | |
| 258-364, gnl|fr1|chrUn (234435831-234435950) | |
| 258-364, gnl|galGal2|chr8 (19911099-19911220) | |
| 258-364, gnl|hg17|chr1 (43287559-43287702) | |
| 258-364, gnl|Hg17|chr1 (43287591-43287697) | |
| 258-364, gnl|hg17|chr2 (102324945-102325043) | |
| 258-364, gnl|hg17|chr7 (38498548-38498653) | |
| 258-364, gnl|hg17|chr8 (29899082-29899221) | |
| 258-364, gnl|loxAfr1|scaffold_10456 (44250-44129) | |
| 258-364, gnl|loxAfr1|scaffold_10456 (44287-44140) | |
| 258-364, gnl|loxAfr1|scaffold_10456 (44149-44249) | |
| 258-364, gnl|loxAfr1|scaffold_10456 (44147-44249) | |
| 258-364, gnl|mm7|chr11 (58878204-58878080) | |
| 258-364, gnl|mm7|chr11 (58878245-58878095) | |
| 258-364, gnl|mm7|chr11 (58878105-58878204) | |
| 258-364, gnl|mm7|chr11 (58878099-58878204) | |
| 258-364, gnl|Mm7|chr11 (58878204-58878098) | |
| 258-364, gnl|oryCun1|scaffold_177089 (4207-4084) | |
| 258-364, gnl|oryCun1|scaffold_177089 (4108-4207) | |
| 258-364, gnl|oryCun1|scaffold_177089 (4102-4207) | |
| 258-364, gnl|oryCun1|scaffold_214649 (85206-85073) | |
| 258-364, gnl|panTro1|chr12_random (1345916-1346013) | |
| 258-364, gnl|panTro1|chr1_random (63545932-63545789) | |
| 258-364, gnl|panTro1|chr6 (39700602-39700707) | |
| 258-364, gnl|panTro1|chr7 (30955906-30956045) | |
| 258-364, gnl|rheMac2|chr1 (46072514-46072657) | |
| 258-364, gnl|rheMac2|chr13 (102182468-102182565) | |
| 258-364, gnl|rheMac2|chr3 (87582177-87582072) | |
| 258-364, gnl|rheMac2|chr8 (30144607-30144746) | |
| 258-364, gnl|rn3|chr10 (45039650-45039527) | |
| 258-364, gnl|rn3|chr10 (45039683-45039541) | |
| 258-364, gnl|rn3|chr10 (45039556-45039650) | |
| 258-364, gnl|rn3|chr10 (45039545-45039650) |
| Aligned organism(s): 84 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 23-198, gnl|bosTau2|chr3 (72093831-72093656) | |
| 23-198, gnl|canFam2|chr15 (20008047-20007799) | |
| 23-198, gnl|canFam2|chr15 (20007799-20008082) | |
| 23-198, gnl|canFam2|chr15 (20007799-20007932) | |
| 23-198, gnl|canFam2|chr15 (20007799-20008004) | |
| 23-198, gnl|dasNov1|scaffold_38998 (11758-11519) | |
| 23-198, gnl|dasNov1|scaffold_38998 (11518-11752) | |
| 23-198, gnl|dasNov1|scaffold_38998 (11518-11652) | |
| 23-198, gnl|dasNov1|scaffold_38998 (11518-11711) | |
| 23-198, gnl|echTel1|scaffold_214193 (1123-1376) | |
| 23-198, gnl|echTel1|scaffold_214193 (1375-1121) | |
| 23-198, gnl|echTel1|scaffold_214193 (1375-1242) | |
| 23-198, gnl|echTel1|scaffold_214193 (1375-1168) | |
| 23-198, gnl|Hg17|chr1 (43282688-43282848) | |
| 23-198, gnl|hg17|chr1_random (1768535-1768668) | |
| 23-198, gnl|hg17|chr2 (102325103-102325374) | |
| 23-198, gnl|hg17|chr7 (38498714-38498923) | |
| 23-198, gnl|hg17|chr8 (29898550-29898790) | |
| 23-198, gnl|mm7|chr11 (58883580-58883306) | |
| 23-198, gnl|mm7|chr11 (58883307-58883565) | |
| 23-198, gnl|mm7|chr11 (58883307-58883441) | |
| 23-198, gnl|mm7|chr11 (58883307-58883510) | |
| 23-198, gnl|Mm7|chr11 (58883472-58883306) | |
| 23-198, gnl|oryCun1|scaffold_177089 (8321-8039) | |
| 23-198, gnl|oryCun1|scaffold_177089 (8040-8339) | |
| 23-198, gnl|oryCun1|scaffold_177089 (8043-8171) | |
| 23-198, gnl|oryCun1|scaffold_177089 (8036-8276) | |
| 23-198, gnl|panTro1|chr1 (202516328-202516461) | |
| 23-198, gnl|panTro1|chr12_random (1346073-1346347) | |
| 23-198, gnl|panTro1|chr1_random (63550863-63550646) | |
| 23-198, gnl|panTro1|chr6 (39700768-39700977) | |
| 23-198, gnl|rheMac2|chr1 (148047649-148047516) | |
| 23-198, gnl|rheMac2|chr13 (102182625-102182895) | |
| 23-198, gnl|rheMac2|chr3 (87582011-87581802) | |
| 23-198, gnl|rheMac2|chr8 (30144076-30144315) | |
| 23-198, gnl|rn3|chr10 (45045830-45045557) | |
| 23-198, gnl|rn3|chr10 (45045558-45045815) | |
| 23-198, gnl|rn3|chr10 (45045558-45045692) | |
| 23-198, gnl|rn3|chr10 (45045558-45045762) | |
| 258-364, gnl|bosTau2|chr3 (72086903-72086797) | |
| 258-364, gnl|canFam2|chr15 (20004565-20004422) | |
| 258-364, gnl|canFam2|chr16 (4739097-4738992) | |
| 258-364, gnl|canFam2|chr16 (4292242-4292337) | |
| 258-364, gnl|canFam2|chr16 (4292236-4292337) | |
| 258-364, gnl|dasNov1|scaffold_38998 (7051-6915) | |
| 258-364, gnl|dasNov1|scaffold_38998 (7084-6941) | |
| 258-364, gnl|dasNov1|scaffold_38998 (6951-7050) | |
| 258-364, gnl|dasNov1|scaffold_38998 (6945-7050) | |
| 258-364, gnl|echTel1|scaffold_214193 (6654-6773) | |
| 258-364, gnl|echTel1|scaffold_214193 (6621-6764) | |
| 258-364, gnl|echTel1|scaffold_214193 (6755-6671) | |
| 258-364, gnl|echTel1|scaffold_214193 (6757-6655) | |
| 258-364, gnl|fr1|chrUn (234435831-234435950) | |
| 258-364, gnl|galGal2|chr8 (19911099-19911220) | |
| 258-364, gnl|hg17|chr1 (43287559-43287702) | |
| 258-364, gnl|Hg17|chr1 (43287591-43287697) | |
| 258-364, gnl|hg17|chr2 (102324945-102325043) | |
| 258-364, gnl|hg17|chr7 (38498548-38498653) | |
| 258-364, gnl|hg17|chr8 (29899082-29899221) | |
| 258-364, gnl|loxAfr1|scaffold_10456 (44250-44129) | |
| 258-364, gnl|loxAfr1|scaffold_10456 (44287-44140) | |
| 258-364, gnl|loxAfr1|scaffold_10456 (44149-44249) | |
| 258-364, gnl|loxAfr1|scaffold_10456 (44147-44249) | |
| 258-364, gnl|mm7|chr11 (58878204-58878080) | |
| 258-364, gnl|mm7|chr11 (58878245-58878095) | |
| 258-364, gnl|mm7|chr11 (58878105-58878204) | |
| 258-364, gnl|mm7|chr11 (58878099-58878204) | |
| 258-364, gnl|Mm7|chr11 (58878204-58878098) | |
| 258-364, gnl|oryCun1|scaffold_177089 (4207-4084) | |
| 258-364, gnl|oryCun1|scaffold_177089 (4108-4207) | |
| 258-364, gnl|oryCun1|scaffold_177089 (4102-4207) | |
| 258-364, gnl|oryCun1|scaffold_214649 (85206-85073) | |
| 258-364, gnl|panTro1|chr12_random (1345916-1346013) | |
| 258-364, gnl|panTro1|chr1_random (63545932-63545789) | |
| 258-364, gnl|panTro1|chr6 (39700602-39700707) | |
| 258-364, gnl|panTro1|chr7 (30955906-30956045) | |
| 258-364, gnl|rheMac2|chr1 (46072514-46072657) | |
| 258-364, gnl|rheMac2|chr13 (102182468-102182565) | |
| 258-364, gnl|rheMac2|chr3 (87582177-87582072) | |
| 258-364, gnl|rheMac2|chr8 (30144607-30144746) | |
| 258-364, gnl|rn3|chr10 (45039650-45039527) | |
| 258-364, gnl|rn3|chr10 (45039683-45039541) | |
| 258-364, gnl|rn3|chr10 (45039556-45039650) | |
| 258-364, gnl|rn3|chr10 (45039545-45039650) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| nmm (0.132802) |