Non-Coding RNA Search

Ss1.1-rnmm24c_o8.5

Sequence:


               
               TTTAGTTTTTTTAAGTATCCATGTGTAAAATTTTATAAATTTGAAAATTACTAAGTGTTG
CCCTCAGAAAAGCTTTATCTTGAGTCAATTAAGGAGACGTCTATTCATATGACCTTTGAA
CCTCTACTTAATGTCAGTACTAGTTTAACTTATTTAAAACTGTTTCAAATATTTATTTGT
CTCATACTTTTAGTGTCTTATGTATAGAAGCCATTTAGAAAATAACTTATAGGGTTAAAT
CATTGCCCTTTTAATGCAACAAAAATGTAATTTTTAAAAAAACCTGCATGGAAGCCTAGT
GTATTTAACAAGTAAAATATACATCAATGTGTAGCATTAACCTATACCAATTTTAAGTTA
TAATTAGGGAATGGGGTTTTTCAGCAGAACTATCTTGCTGTGTAACTTTAAAAAAATATA
TATATATATGACCACATTATAATTCTCAGAATGCTCAGGAGTAATCATAAAGCTTCATTG
CTGTACCAGAAGACTTTTATATAGTTAGAGCAATAACGATATTAATTCATATGCATGCAG
GCAATTCAGACTCAAGTGGGGAATTTGTTTTGCTTGTGAACAAATCATACCATATGTGTT
CTATTATTTGCATGAAGGAAATTGGCAGTATCTTTTTCCATAAGAAACACTAAAAGAAAA
CCCTGACTTGAGAATGATCTGCAGTTTTAGATAATGAAGGCTTTTAAGAGATGTTTTTAG
AATTAAGGATATGCTAATTTTATTAAATGAAAATATTTGTAACTTTTACTCCCTCACTAA
CAAAGCAAGTTTCTCAATAAAATACCTCTTTTAGCTTGCATTGCCAGCATCTTTTTTTTT
TTTTTTTTTTGAGTAATCTCAAAAATAATGCAGAAGCCATCAGAGAAGTCTTTTCCATGG
GTTTTCAATGTTTCCTTAAATGGGTCTCCTGAGATTGTTGTGTTCCTCATGACCCTATAG
GATCTGTGCACCAGGCCTTGCCCAGTAATTCACTCAGCAAAAACCTTTTATTAATGAGTC
AATATGACATTAGAGTCCTTCTCACATATTTCATAATTTGTAATATGCAGGGTCACTGGA
GTTCCCTTGTGGTACAGCAGGTTAAGGATCCAGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAGTTTTTTTAAGTATCCATGTGTAAAATTTTATAAATTTGAAAATTACTAAGTGTTG
CCCTCAGAAAAGCTTTATCTTGAGTCAATTAAGGAGACGTCTATTCATATGACCTTTGAA
CCTCTACTTAATGTCAGTACTAGTTTAACTTATTTAAAACTGTTTCAAATATTTATTTGT
CTCATACTTTTAGTGTCTTATGTATAGAAGCCATTTAGAAAATAACTTATAGGGTTAAAT
CATTGCCCTTTTAATGCAACAAAAATGTAATTTTTAAAAAAACCTGCATGGAAGCCTAGT
GTATTTAACAAGTAAAATATACATCAATGTGTAGCATTAACCTATACCAATTTTAAGTTA
TAATTAGGGAATGGGGTTTTTCAGCAGAACTATCTTGCTGTGTAACTTTAAAAAAATATA
TATATATATGACCACATTATAATTCTCAGAATGCTCAGGAGTAATCATAAAGCTTCATTG
CTGTACCAGAAGACTTTTATATAGTTAGAGCAATAACGATATTAATTCATATGCATGCAG
GCAATTCAGACTCAAGTGGGGAATTTGTTTTGCTTGTGAACAAATCATACCATATGTGTT
CTATTATTTGCATGAAGGAAATTGGCAGTATCTTTTTCCATAAGAAACACTAAAAGAAAA
CCCTGACTTGAGAATGATCTGCAGTTTTAGATAATGAAGGCTTTTAAGAGATGTTTTTAG
AATTAAGGATATGCTAATTTTATTAAATGAAAATATTTGTAACTTTTACTCCCTCACTAA
CAAAGCAAGTTTCTCAATAAAATACCTCTTTTAGCTTGCATTGCCAGCATCTTTTTTTTT
TTTTTTTTTTGAGTAATCTCAAAAATAATGCAGAAGCCATCAGAGAAGTCTTTTCCATGG
GTTTTCAATGTTTCCTTAAATGGGTCTCCTGAGATTGTTGTGTTCCTCATGACCCTATAG
GATCTGTGCACCAGGCCTTGCCCAGTAATTCACTCAGCAAAAACCTTTTATTAATGAGTC
AATATGACATTAGAGTCCTTCTCACATATTTCATAATTTGTAATATGCAGGGTCACTGGA
GTTCCCTTGTGGTACAGCAGGTTAAGGATCCAGTGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               534-653, - strand, RNAz p=0.83816
               

               
               734-852, - strand, RNAz p=0.997387

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               534-653, - strand, RNAz p=0.83816
               

               
               734-852, - strand, RNAz p=0.997387

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               789-909, + strand, RNAmicro p=0.999945

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               789-909, + strand, RNAmicro p=0.999945

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               9-1076, gnl|bosTau2|chr2 (14463508-14462464)
               

               
               9-1076, gnl|Hg17|chr2 (175123529-175122241)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1076, gnl|bosTau2|chr2 (14463508-14462464)
               

               
               9-1076, gnl|Hg17|chr2 (175123529-175122241)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)

	534-653, - strand, RNAz p=0.83816
	734-852, - strand, RNAz p=0.997387

	9-1076, gnl\|bosTau2\|chr2 (14463508-14462464)
	9-1076, gnl\|Hg17\|chr2 (175123529-175122241)

	vin (0.332557)
	cmu (0.186393)
	mgm (0.180343)
	isp (0.150376)
	fat (0.147427)
	nmm (0.132802)
	tra (0.123092)