Non-Coding RNA Search

Ss1.1-rnmm25c_c4.5

Sequence:


               
               CAGGAATTCGGACGAGGGCCCGGCGAGCGGCGGCCGCGGCAGGACATCGTCTGGAGGAAC
GTCGTGCTGATGAGCCTGCTCCACTTGGGGGCCGTGTACTCCCTGCTGCTCATCCCCAAA
GCCCAGCCGCTCACGCTGCTCTGGGCCTACTTCTGCTTCCTCCTGACCCGCTCTGGGTGT
GACAGCGGGCGCCCATCGCTTGTGGAGCCACAGGTCCTACAAGGCCAAGCTGCCTCTGAG
GATATTTCTGGCTGTCGCCAACTCCATGGCTTTCCAGAACGACATCTTCGAGTGGTCCAG
GGACCACCGCGTCCACCACAAGTACTCGGAGACGGACGCTGACCCCCACAACGCCCGGCG
CGGCTTCTTCTTCTCTCACATCGGGTGGCTGTTTGTCCGCAAGCACCGGGATGTCATCGA
GAAGGGGAGGAAGCTGGACGTTACCGACCTGCTGGCTGACCCTGTGGTCCGGTTCCAGAG
AAAGTACTATAAGATCTCCGTGGTGCTCATGTGCTTCGTGGTCCCCACGCTGGTGCCCTG
GGGCGTCTGGGGGGAGAGCCTGTGGAATTCCTACTTCCTGGCCTCCATCCTCCGCTACAC
CGTCTCACTCAACGTCACCTGGCTGGTCAACAGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAATTCGGACGAGGGCCCGGCGAGCGGCGGCCGCGGCAGGACATCGTCTGGAGGAAC
GTCGTGCTGATGAGCCTGCTCCACTTGGGGGCCGTGTACTCCCTGCTGCTCATCCCCAAA
GCCCAGCCGCTCACGCTGCTCTGGGCCTACTTCTGCTTCCTCCTGACCCGCTCTGGGTGT
GACAGCGGGCGCCCATCGCTTGTGGAGCCACAGGTCCTACAAGGCCAAGCTGCCTCTGAG
GATATTTCTGGCTGTCGCCAACTCCATGGCTTTCCAGAACGACATCTTCGAGTGGTCCAG
GGACCACCGCGTCCACCACAAGTACTCGGAGACGGACGCTGACCCCCACAACGCCCGGCG
CGGCTTCTTCTTCTCTCACATCGGGTGGCTGTTTGTCCGCAAGCACCGGGATGTCATCGA
GAAGGGGAGGAAGCTGGACGTTACCGACCTGCTGGCTGACCCTGTGGTCCGGTTCCAGAG
AAAGTACTATAAGATCTCCGTGGTGCTCATGTGCTTCGTGGTCCCCACGCTGGTGCCCTG
GGGCGTCTGGGGGGAGAGCCTGTGGAATTCCTACTTCCTGGCCTCCATCCTCCGCTACAC
CGTCTCACTCAACGTCACCTGGCTGGTCAACAGTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57109256|ref|XP_544953.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57109256|ref|XP_544953.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               484-635, gnl|bosTau2|chr11 (81271241-81271090)
               

               
               484-635, gnl|Hg17|chr4 (83915155-83915004)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               484-635, gnl|bosTau2|chr11 (81271241-81271090)
               

               
               484-635, gnl|Hg17|chr4 (83915155-83915004)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               ecc (0.115035)

	484-635, gnl\|bosTau2\|chr11 (81271241-81271090)
	484-635, gnl\|Hg17\|chr4 (83915155-83915004)