Non-Coding RNA Search

Ss1.1-rnmm25c_j18.5

Sequence:


               
               AGACAACCAGGTCCGGCCGGCCCCGAGGCTGTGCGGAGCCGGTAAGGCGGCGGAATGCAC
CGGGCTATCACGCCATCCGCGTACCTGCCGAGCCCCGACTACTACAAGAGGCTGGACCAC
CTCCAGCAAGGGCTGCGGGACAGTGAAAAGAAGAGATTGGAGCTAGAAAGGAAACTCTAT
GAATGTAATCCATCTGATATATGCAGAGTTAAGCCGAAGTATGGAGAACTAAAGAAGTAC
CTGAAGGAAATATGTGAATCAGAAAAGAGGGCTCGAACTCGAAACCAAGAATACTTAAAG
CGGTTTGAGCAGATCCAAGCTCACCTTGGGCACTTTACCACAAAGGCAGAACTGAAGCTG
CAAGAACTGAAGGTTGAATATGAGACTCAACTTAAGAAGATGCAGCTACTTTCAAAAGAG
GAAAAGAGTGACGTGAAAGAGGAGGATGGAGCAAAGCTTGTAATGCCAGCAAAAATTAAC
TTGGGGACAGCTGTGTCAAGAGGATTGTATCAACCAGCAACAATCTTTATGGGCCGCCAA
ATGTCAGCCGTCTCAAGCATGGGGGATTTCAGTGCAGAGCAGAAATCTCCCCAGCCCACA
AAGAACTTTTCAATTCCTGACCCACATTCACACCGACAGACAGCCCAGCGCAGTGATGTG
ACAGACAGCAATGTAGTACAAACTAATGGTGACACGCAGTGCTTAAATAAGTCTGACAAA
ACAGATGGAAAGACATCTCTTCAGATTGGTGAGAAAATGCCCGTCACAGCCAGCGCCTTG
TCTGAGGAGGAACAGACTCATTGCTCCAAGATAGGAAGCGGTGCCTGTCTTGGCAAGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACAACCAGGTCCGGCCGGCCCCGAGGCTGTGCGGAGCCGGTAAGGCGGCGGAATGCAC
CGGGCTATCACGCCATCCGCGTACCTGCCGAGCCCCGACTACTACAAGAGGCTGGACCAC
CTCCAGCAAGGGCTGCGGGACAGTGAAAAGAAGAGATTGGAGCTAGAAAGGAAACTCTAT
GAATGTAATCCATCTGATATATGCAGAGTTAAGCCGAAGTATGGAGAACTAAAGAAGTAC
CTGAAGGAAATATGTGAATCAGAAAAGAGGGCTCGAACTCGAAACCAAGAATACTTAAAG
CGGTTTGAGCAGATCCAAGCTCACCTTGGGCACTTTACCACAAAGGCAGAACTGAAGCTG
CAAGAACTGAAGGTTGAATATGAGACTCAACTTAAGAAGATGCAGCTACTTTCAAAAGAG
GAAAAGAGTGACGTGAAAGAGGAGGATGGAGCAAAGCTTGTAATGCCAGCAAAAATTAAC
TTGGGGACAGCTGTGTCAAGAGGATTGTATCAACCAGCAACAATCTTTATGGGCCGCCAA
ATGTCAGCCGTCTCAAGCATGGGGGATTTCAGTGCAGAGCAGAAATCTCCCCAGCCCACA
AAGAACTTTTCAATTCCTGACCCACATTCACACCGACAGACAGCCCAGCGCAGTGATGTG
ACAGACAGCAATGTAGTACAAACTAATGGTGACACGCAGTGCTTAAATAAGTCTGACAAA
ACAGATGGAAAGACATCTCTTCAGATTGGTGAGAAAATGCCCGTCACAGCCAGCGCCTTG
TCTGAGGAGGAACAGACTCATTGCTCCAAGATAGGAAGCGGTGCCTGTCTTGGCAAGAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56203930|emb|CAI23083.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56203930|emb|CAI23083.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               494-840, - strand, RNAz p=0.943928

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               494-840, - strand, RNAz p=0.943928

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               205-360, gnl|bosTau2|chr13 (25903418-25903260)
               

               
               205-360, gnl|Hg17|chr20 (21065029-21065196)
               

               
               205-360, gnl|Mm7|chr2 (146604562-146604729)
               


               
               455-840, gnl|bosTau2|chr13 (25890447-25890062)
               

               
               455-840, gnl|Hg17|chr20 (21090510-21090895)
               

               
               455-840, gnl|Mm7|chr2 (146629876-146630261)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               205-360, gnl|bosTau2|chr13 (25903418-25903260)
               

               
               205-360, gnl|Hg17|chr20 (21065029-21065196)
               

               
               205-360, gnl|Mm7|chr2 (146604562-146604729)
               


               
               455-840, gnl|bosTau2|chr13 (25890447-25890062)
               

               
               455-840, gnl|Hg17|chr20 (21090510-21090895)
               

               
               455-840, gnl|Mm7|chr2 (146629876-146630261)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	205-360, gnl\|bosTau2\|chr13 (25903418-25903260)
	205-360, gnl\|Hg17\|chr20 (21065029-21065196)
	205-360, gnl\|Mm7\|chr2 (146604562-146604729)

	455-840, gnl\|bosTau2\|chr13 (25890447-25890062)
	455-840, gnl\|Hg17\|chr20 (21090510-21090895)
	455-840, gnl\|Mm7\|chr2 (146629876-146630261)