Non-Coding RNA Search

Ss1.1-rnmm26c_a14.5

Sequence:


               
               ACACTACCACGGCTTTCCAGTTCGCGAGTGCTGGCTGCACGGCTGCCCTAGGGTCATGGC
CTCCTCCAAACCGCAGTGCCCCAGCTTGGCGACCACGTCGAGAATACACCTGCGGCCTCT
AGGAGTGACCAAAGATGATTCCTTCATCACAGAAACCAAGAATCCCCAAAAGCGCAAGCT
TTCTCAGAAACGGAAGACACTGCTGTCCTGTCCATTCTCAATTGGTGGCCACCTGTCCCC
ATGGCCCAGATACATCAGTGACCAGACCATTCTGCATAATCGAAAGCCCTGTTCAGATGA
CTACCAGAAGCGAACCAACAGCTGGCAGCAGCCCCTGGGCACTACCAAGCCAAGGTACCT
GGAGCAGCTAGAGAACTACCTACGCAAGGAGCTCCTCCTGCTGGACTTGGGCACAGATTC
TGCTCAGGAACTGAGGCTACAGCCTTTCAGAGAGATCTTTGAATTCTTCATAGAAGACTT
CAAAACATACAAGCCATTGCTGTCTTCCATCAAAAACGCGTATGAAGTGATGCTGGGTAA
GACTGAAGCCTCTCTGCCTGGGCCCAGCCTGGAAGAGGCAGAGAGGATCCTACTGTTACC
TTCTGGGCTCTGCAGCAGGGCTGGGGCAGCTGTGAACTGGGCCTGGAGGTCATCAAGCCT
CATTCAGCCTTTCTGTTTACACTGGCCTTTGATAGGACACCCCAGGGCAAGTGACCACCT
CCCATTCTTGGGAAGCATGGGGGGGGGGCAGTATCTGTTGGAAAGAGAGCACCTTTTCTA
TGGAGAGTGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACTACCACGGCTTTCCAGTTCGCGAGTGCTGGCTGCACGGCTGCCCTAGGGTCATGGC
CTCCTCCAAACCGCAGTGCCCCAGCTTGGCGACCACGTCGAGAATACACCTGCGGCCTCT
AGGAGTGACCAAAGATGATTCCTTCATCACAGAAACCAAGAATCCCCAAAAGCGCAAGCT
TTCTCAGAAACGGAAGACACTGCTGTCCTGTCCATTCTCAATTGGTGGCCACCTGTCCCC
ATGGCCCAGATACATCAGTGACCAGACCATTCTGCATAATCGAAAGCCCTGTTCAGATGA
CTACCAGAAGCGAACCAACAGCTGGCAGCAGCCCCTGGGCACTACCAAGCCAAGGTACCT
GGAGCAGCTAGAGAACTACCTACGCAAGGAGCTCCTCCTGCTGGACTTGGGCACAGATTC
TGCTCAGGAACTGAGGCTACAGCCTTTCAGAGAGATCTTTGAATTCTTCATAGAAGACTT
CAAAACATACAAGCCATTGCTGTCTTCCATCAAAAACGCGTATGAAGTGATGCTGGGTAA
GACTGAAGCCTCTCTGCCTGGGCCCAGCCTGGAAGAGGCAGAGAGGATCCTACTGTTACC
TTCTGGGCTCTGCAGCAGGGCTGGGGCAGCTGTGAACTGGGCCTGGAGGTCATCAAGCCT
CATTCAGCCTTTCTGTTTACACTGGCCTTTGATAGGACACCCCAGGGCAAGTGACCACCT
CCCATTCTTGGGAAGCATGGGGGGGGGGCAGTATCTGTTGGAAAGAGAGCACCTTTTCTA
TGGAGAGTGATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               444-682, - strand, RNAz p=0.999397

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               444-682, - strand, RNAz p=0.999397

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               440-790, gnl|bosTau2|chr18 (15022415-15022080)
               

               
               440-790, gnl|Hg17|chr16 (66415027-66415667)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               440-790, gnl|bosTau2|chr18 (15022415-15022080)
               

               
               440-790, gnl|Hg17|chr16 (66415027-66415667)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	440-790, gnl\|bosTau2\|chr18 (15022415-15022080)
	440-790, gnl\|Hg17\|chr16 (66415027-66415667)