Ss1.1-rnmm26c_f14.5.15
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGCCCTTCGCACCACTCCGCGAGAAAACGAAGGCACTGATTTGTCATCCCCGTGCGTA ACCTATTTTCAGGAATGATCCCCAGGTCCTCTGGTGTTTATGAAATAGTGAACCCGTCTG ATTTGGCGCTCTCCAAGGTCCTGTGCTGGCTGCGCGTTCCTTCCCGGCCCCTCATCTGAA TAGTGAGGCTGGCCGGCGGTGGCCACCCAAGGCCAGTGCAGAGCAGGGGGTGGGGTCTGG CCCACTGGGGTCACCCTTTGGAACCCCTTCCCGGGGGGCCACTCTTGCACGCCCTGGGGG CTGGTGACTTCTCAGCTGCTGGACGGCTGGAGATGGAAGAGAGAAAGCCAGGCAGACACT GCGGGGGCCACCCTCGCGCCCCCCGGGACCTCTCTTCCCCCGAGAGAGTTTAATCATTCT TTTTAAGTGCCTTCTTCGCAGCCCCGGCTGGTGCCTGGAAATAAAGGGACCAGCTCTTGC CGGCTTATGACTCCATAGCCACTTGCAAGGGGCGCGGAAACCTGGTGAGGGTGTAGACGG CGCCCTCAGAGCAGGTGCCCCCCCCCGCCCCCATCCTGAGCACTGCTGGGACTGGGGGCC CTGTGTGTTGGGTGGGGCTCCACCCCCGGAGACCAGCCTTACACCCCGCCTCCTCCCAGT CCCTCTCCCCAGCCTCCCGGGAGACTGTGGGACACCCCCCCCAACACTGTGGTCCTGGGG GGCTGGTGCTGCTGACCCTTTTAAGACCTGTTAATCACGTGGAAATTGAGGTCCCCCGGG GAAATCAGGGATGCTGATTAAACGACACTGTTTCCTACTGTAAAATTTCTACACGTTGCT ACCTCAGTGCTCACGGAATCTGGGCCGTGCCCCCTAAGGCGTTCCTCCCCTTGGTTCTTT GAAACCACTGTGGTCCTTTGCCACGTGTGAGCAGTGGCCGGCGTGAGCTGCTTTTACAAA GCGACTGGCTCCTCATTCAATGTTCTCTACGGGACGCACTGAAGCACGGCACTGTGGCAA AGAAGATGGGGGCCTCGGGGCTCCCTGTGGCCCCTTCTGGCCCCTGAGGTTCCCCAGAGG GAAGGTTGGGCCTGAATTGCGGAGTGTGACGTGTCAACGCAGAGATCCTCGCAGACACAC TGAAAACGAAGCGAGCAGTTCTGCGCTGGGACCTAAGCTTGGATGGAGGCCGTACGATCC CCTGGCAGGATGCATCCGTGCCACGCACGTCTTGGGCCACAGCATCCCCAGGGAGGGGCC GTGCAGACAGACGTGTCTGCTCCCAGAGCCAGATTTTAAAAAAAGCGTTGTCGCGGGGTG AAGGCATCCCTTCTTTAGGGCTCCTTTTAATTTATGTGACGTCTGTTCTGGTCTCTGTTT TGTATCTTTTTTTAACTGTAAAATTCAGTTGTGAAAAATTGTGCAAATAAATTATACATT TTTTTTTTCCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGCCCTTCGCACCACTCCGCGAGAAAACGAAGGCACTGATTTGTCATCCCCGTGCGTA ACCTATTTTCAGGAATGATCCCCAGGTCCTCTGGTGTTTATGAAATAGTGAACCCGTCTG ATTTGGCGCTCTCCAAGGTCCTGTGCTGGCTGCGCGTTCCTTCCCGGCCCCTCATCTGAA TAGTGAGGCTGGCCGGCGGTGGCCACCCAAGGCCAGTGCAGAGCAGGGGGTGGGGTCTGG CCCACTGGGGTCACCCTTTGGAACCCCTTCCCGGGGGGCCACTCTTGCACGCCCTGGGGG CTGGTGACTTCTCAGCTGCTGGACGGCTGGAGATGGAAGAGAGAAAGCCAGGCAGACACT GCGGGGGCCACCCTCGCGCCCCCCGGGACCTCTCTTCCCCCGAGAGAGTTTAATCATTCT TTTTAAGTGCCTTCTTCGCAGCCCCGGCTGGTGCCTGGAAATAAAGGGACCAGCTCTTGC CGGCTTATGACTCCATAGCCACTTGCAAGGGGCGCGGAAACCTGGTGAGGGTGTAGACGG CGCCCTCAGAGCAGGTGCCCCCCCCCGCCCCCATCCTGAGCACTGCTGGGACTGGGGGCC CTGTGTGTTGGGTGGGGCTCCACCCCCGGAGACCAGCCTTACACCCCGCCTCCTCCCAGT CCCTCTCCCCAGCCTCCCGGGAGACTGTGGGACACCCCCCCCAACACTGTGGTCCTGGGG GGCTGGTGCTGCTGACCCTTTTAAGACCTGTTAATCACGTGGAAATTGAGGTCCCCCGGG GAAATCAGGGATGCTGATTAAACGACACTGTTTCCTACTGTAAAATTTCTACACGTTGCT ACCTCAGTGCTCACGGAATCTGGGCCGTGCCCCCTAAGGCGTTCCTCCCCTTGGTTCTTT GAAACCACTGTGGTCCTTTGCCACGTGTGAGCAGTGGCCGGCGTGAGCTGCTTTTACAAA GCGACTGGCTCCTCATTCAATGTTCTCTACGGGACGCACTGAAGCACGGCACTGTGGCAA AGAAGATGGGGGCCTCGGGGCTCCCTGTGGCCCCTTCTGGCCCCTGAGGTTCCCCAGAGG GAAGGTTGGGCCTGAATTGCGGAGTGTGACGTGTCAACGCAGAGATCCTCGCAGACACAC TGAAAACGAAGCGAGCAGTTCTGCGCTGGGACCTAAGCTTGGATGGAGGCCGTACGATCC CCTGGCAGGATGCATCCGTGCCACGCACGTCTTGGGCCACAGCATCCCCAGGGAGGGGCC GTGCAGACAGACGTGTCTGCTCCCAGAGCCAGATTTTAAAAAAAGCGTTGTCGCGGGGTG AAGGCATCCCTTCTTTAGGGCTCCTTTTAATTTATGTGACGTCTGTTCTGGTCTCTGTTT TGTATCTTTTTTTAACTGTAAAATTCAGTTGTGAAAAATTGTGCAAATAAATTATACATT TTTTTTTTCCAA |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 159-375, gnl|bosTau2|chr1 (93481495-93481281) | |
| 159-375, gnl|Hg17|chr21 (41759750-41759515) | |
| 159-375, gnl|Mm7|chr16 (97949703-97949494) | |
| 381-523, gnl|bosTau2|chr1 (93481247-93481106) | |
| 381-523, gnl|Hg17|chr21 (41759495-41759358) | |
| 381-523, gnl|Mm7|chr16 (97949463-97949322) | |
| 645-1118, gnl|bosTau2|chr1 (93481021-93480542) | |
| 645-1118, gnl|canFam2|chr31 (38259448-38260048) | |
| 645-1118, gnl|dasNov1|scaffold_18784 (7420-8053) | |
| 645-1118, gnl|echTel1|scaffold_279714 (67206-66565) | |
| 645-1118, gnl|hg17|chr21 (41758714-41759426) | |
| 645-1118, gnl|Hg17|chr21 (41759226-41758727) | |
| 645-1118, gnl|loxAfr1|scaffold_123498 (4665-5384) | |
| 645-1118, gnl|mm7|chr16 (97948781-97949388) | |
| 645-1118, gnl|panTro1|chr22 (41807121-41807833) | |
| 645-1118, gnl|rheMac2|chr3 (5182651-5181995) | |
| 645-1118, gnl|rn3|chr11 (37635002-37635609) | |
| 1270-1452, gnl|bosTau2|chr1 (93480393-93480216) | |
| 1270-1452, gnl|canFam2|chr31 (38259033-38259447) | |
| 1270-1452, gnl|dasNov1|scaffold_18784 (6989-7419) | |
| 1270-1452, gnl|echTel1|scaffold_279714 (67602-67207) | |
| 1270-1452, gnl|hg17|chr21 (41758278-41758713) | |
| 1270-1452, gnl|Hg17|chr21 (41758535-41758353) | |
| 1270-1452, gnl|loxAfr1|scaffold_123498 (3638-4038) | |
| 1270-1452, gnl|mm7|chr16 (97948368-97948780) | |
| 1270-1452, gnl|panTro1|chr22 (41806685-41807120) | |
| 1270-1452, gnl|rheMac2|chr3 (5183086-5182652) | |
| 1270-1452, gnl|rn3|chr11 (37634575-37635001) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 159-375, gnl|bosTau2|chr1 (93481495-93481281) | |
| 159-375, gnl|Hg17|chr21 (41759750-41759515) | |
| 159-375, gnl|Mm7|chr16 (97949703-97949494) | |
| 381-523, gnl|bosTau2|chr1 (93481247-93481106) | |
| 381-523, gnl|Hg17|chr21 (41759495-41759358) | |
| 381-523, gnl|Mm7|chr16 (97949463-97949322) | |
| 645-1118, gnl|bosTau2|chr1 (93481021-93480542) | |
| 645-1118, gnl|canFam2|chr31 (38259448-38260048) | |
| 645-1118, gnl|dasNov1|scaffold_18784 (7420-8053) | |
| 645-1118, gnl|echTel1|scaffold_279714 (67206-66565) | |
| 645-1118, gnl|hg17|chr21 (41758714-41759426) | |
| 645-1118, gnl|Hg17|chr21 (41759226-41758727) | |
| 645-1118, gnl|loxAfr1|scaffold_123498 (4665-5384) | |
| 645-1118, gnl|mm7|chr16 (97948781-97949388) | |
| 645-1118, gnl|panTro1|chr22 (41807121-41807833) | |
| 645-1118, gnl|rheMac2|chr3 (5182651-5181995) | |
| 645-1118, gnl|rn3|chr11 (37635002-37635609) | |
| 1270-1452, gnl|bosTau2|chr1 (93480393-93480216) | |
| 1270-1452, gnl|canFam2|chr31 (38259033-38259447) | |
| 1270-1452, gnl|dasNov1|scaffold_18784 (6989-7419) | |
| 1270-1452, gnl|echTel1|scaffold_279714 (67602-67207) | |
| 1270-1452, gnl|hg17|chr21 (41758278-41758713) | |
| 1270-1452, gnl|Hg17|chr21 (41758535-41758353) | |
| 1270-1452, gnl|loxAfr1|scaffold_123498 (3638-4038) | |
| 1270-1452, gnl|mm7|chr16 (97948368-97948780) | |
| 1270-1452, gnl|panTro1|chr22 (41806685-41807120) | |
| 1270-1452, gnl|rheMac2|chr3 (5183086-5182652) | |
| 1270-1452, gnl|rn3|chr11 (37634575-37635001) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| jej (0.0989218) | |
| eje (0.0988338) |