Ss1.1-rnmm27c_j6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCCTCCTGGAGTCAGAGCTGGTTGGGGAAGCTACTGAGATGGTCAACCCTCTCCTGGA GCCTGTGGAGCACGAGATGGGAAAGTTTTCATGCCTGGGAACAAGGTCCTTTTGCACCTC AACCTTCTCCGTACGTCTTCCAACTCATCCCCTCCACCCCCTGCCCTCCTGGCAGGAGGC TAGCCCATGCGGCCATGAGGGCACCCGGCCCAGCTCCATGGAACAGAACCTGGTTCTCCC ATGGCTGGGCATCCTGACGATGAAGGCCCTCTTGCACAGGGAAACCGCATCACAGAGGTG GGGCTGGAGGCCTTCCTCACCGCAGTGCAGTACCAGGTGCAGTTCTCCAAGTCCAAGAGC GCGTCCAAGGGCCCTGTGGGACTGCTGTGGCTGTCCCTGGCGAAAAACTACTTCTCCCCA CAATGTCCTGCGTATGCCATGATCCAGGAACTGATGCTGCCAAGGGATCCTATCAGCAAG GCCAAGCACAGAGAGGAGGAGGCCATGGCTTCCTCCTAGCCCCCTCCCACCTTCTTCCCA GAGATCCTGGGCCAGGAAGCACATCTCTTTCCATGTGTGGCTACACCTCCCTGGGGAGAG CTCAGATCATTAACAAAGCCTGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCCTCCTGGAGTCAGAGCTGGTTGGGGAAGCTACTGAGATGGTCAACCCTCTCCTGGA GCCTGTGGAGCACGAGATGGGAAAGTTTTCATGCCTGGGAACAAGGTCCTTTTGCACCTC AACCTTCTCCGTACGTCTTCCAACTCATCCCCTCCACCCCCTGCCCTCCTGGCAGGAGGC TAGCCCATGCGGCCATGAGGGCACCCGGCCCAGCTCCATGGAACAGAACCTGGTTCTCCC ATGGCTGGGCATCCTGACGATGAAGGCCCTCTTGCACAGGGAAACCGCATCACAGAGGTG GGGCTGGAGGCCTTCCTCACCGCAGTGCAGTACCAGGTGCAGTTCTCCAAGTCCAAGAGC GCGTCCAAGGGCCCTGTGGGACTGCTGTGGCTGTCCCTGGCGAAAAACTACTTCTCCCCA CAATGTCCTGCGTATGCCATGATCCAGGAACTGATGCTGCCAAGGGATCCTATCAGCAAG GCCAAGCACAGAGAGGAGGAGGCCATGGCTTCCTCCTAGCCCCCTCCCACCTTCTTCCCA GAGATCCTGGGCCAGGAAGCACATCTCTTTCCATGTGTGGCTACACCTCCCTGGGGAGAG CTCAGATCATTAACAAAGCCTGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 481-593, + strand, RNAz p=0.607372 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 481-593, + strand, RNAz p=0.607372 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_144702, + |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 18-142, gnl|bosTau2|chr3 (9952120-9952245) | |
| 18-142, gnl|canFam2|chr7 (44069684-44069220) | |
| 18-142, gnl|dasNov1|scaffold_5842 (4313-4760) | |
| 18-142, gnl|echTel1|scaffold_308694 (86612-86994) | |
| 18-142, gnl|hg17|chr1 (153714509-153714975) | |
| 18-142, gnl|Hg17|chr1 (153714779-153714904) | |
| 18-142, gnl|mm7|chr3 (87853997-87853551) | |
| 18-142, gnl|Mm7|chr3 (87853746-87853621) | |
| 18-142, gnl|monDom2|scaffold_59 (314479-314062) | |
| 18-142, gnl|oryCun1|scaffold_199691 (193017-193482) | |
| 18-142, gnl|panTro1|chr1 (135680361-135680823) | |
| 18-142, gnl|rheMac2|chr1 (135542234-135542706) | |
| 18-142, gnl|rn3|chr2 (179750030-179749606) | |
| 402-624, gnl|bosTau2|chr3 (9952930-9953156) | |
| 402-624, gnl|canFam2|chr7 (44068844-44068410) | |
| 402-624, gnl|dasNov1|scaffold_5842 (5343-5872) | |
| 402-624, gnl|echTel1|scaffold_308694 (87384-87744) | |
| 402-624, gnl|hg17|chr1 (153715504-153715988) | |
| 402-624, gnl|Hg17|chr1 (153715717-153715942) | |
| 402-624, gnl|loxAfr1|scaffold_53854 (3272-3863) | |
| 402-624, gnl|mm7|chr3 (87853139-87852785) | |
| 402-624, gnl|monDom2|scaffold_59 (313584-313154) | |
| 402-624, gnl|oryCun1|scaffold_199691 (193879-194291) | |
| 402-624, gnl|panTro1|chr1 (135681352-135681831) | |
| 402-624, gnl|rheMac2|chr1 (135543229-135543703) | |
| 402-624, gnl|rn3|chr2 (179749167-179748804) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-142, gnl|bosTau2|chr3 (9952120-9952245) | |
| 18-142, gnl|canFam2|chr7 (44069684-44069220) | |
| 18-142, gnl|dasNov1|scaffold_5842 (4313-4760) | |
| 18-142, gnl|echTel1|scaffold_308694 (86612-86994) | |
| 18-142, gnl|hg17|chr1 (153714509-153714975) | |
| 18-142, gnl|Hg17|chr1 (153714779-153714904) | |
| 18-142, gnl|mm7|chr3 (87853997-87853551) | |
| 18-142, gnl|Mm7|chr3 (87853746-87853621) | |
| 18-142, gnl|monDom2|scaffold_59 (314479-314062) | |
| 18-142, gnl|oryCun1|scaffold_199691 (193017-193482) | |
| 18-142, gnl|panTro1|chr1 (135680361-135680823) | |
| 18-142, gnl|rheMac2|chr1 (135542234-135542706) | |
| 18-142, gnl|rn3|chr2 (179750030-179749606) | |
| 402-624, gnl|bosTau2|chr3 (9952930-9953156) | |
| 402-624, gnl|canFam2|chr7 (44068844-44068410) | |
| 402-624, gnl|dasNov1|scaffold_5842 (5343-5872) | |
| 402-624, gnl|echTel1|scaffold_308694 (87384-87744) | |
| 402-624, gnl|hg17|chr1 (153715504-153715988) | |
| 402-624, gnl|Hg17|chr1 (153715717-153715942) | |
| 402-624, gnl|loxAfr1|scaffold_53854 (3272-3863) | |
| 402-624, gnl|mm7|chr3 (87853139-87852785) | |
| 402-624, gnl|monDom2|scaffold_59 (313584-313154) | |
| 402-624, gnl|oryCun1|scaffold_199691 (193879-194291) | |
| 402-624, gnl|panTro1|chr1 (135681352-135681831) | |
| 402-624, gnl|rheMac2|chr1 (135543229-135543703) | |
| 402-624, gnl|rn3|chr2 (179749167-179748804) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.265604) |