Ss1.1-rnmm28c_a10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGGAAACCCGCGGGGGGGGTGCTGCTGGCCGAGGCGGAGCACATCGTGGTGCTGCAGT ACCTACGTGCGCTGATGCAAGGCCGCCTAGTGTGCCGCAATGCCGAGGAGCGGACACAGG CGGCCGAGCGCCTACGGCAAGATGCCGCCCAGCTTCAGGAGCTTTTCCTGAGGGGGGGGC TGGAGGAGAGCGTTCAGTGCGCGCCGGTGCTGCTCGCCCTGAGGGAGTTGCTGAACCTCC GGGACCCCACACTACTTGGCCTCGAGGTGGCAGGCCTGCGGCAACAATTTCCCGATGTGA GCGAGGATCACGTCTCCGCCCTCTTGGACCTGCGCGGGGACGTGTCGCGAGAGCAGCGCC TGGCCGCACTCAGCTCCCTGCAGGTCGGCCCACAGCCATCGCCCCAAGCTGGACGCCGCG CACTCTTCAGCCTCGTGCCAACACCTGCACCCCCGCTGTCTTCCTGCCTCCCTTCGGGGT CCTGTGCCTGACCTCCAGCTGCCTGCAAAATAAAGCTACGGCCCCATTCACGGCCTGGAT GTGTTTGCTGGAGAAAGGGGGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGGAAACCCGCGGGGGGGGTGCTGCTGGCCGAGGCGGAGCACATCGTGGTGCTGCAGT ACCTACGTGCGCTGATGCAAGGCCGCCTAGTGTGCCGCAATGCCGAGGAGCGGACACAGG CGGCCGAGCGCCTACGGCAAGATGCCGCCCAGCTTCAGGAGCTTTTCCTGAGGGGGGGGC TGGAGGAGAGCGTTCAGTGCGCGCCGGTGCTGCTCGCCCTGAGGGAGTTGCTGAACCTCC GGGACCCCACACTACTTGGCCTCGAGGTGGCAGGCCTGCGGCAACAATTTCCCGATGTGA GCGAGGATCACGTCTCCGCCCTCTTGGACCTGCGCGGGGACGTGTCGCGAGAGCAGCGCC TGGCCGCACTCAGCTCCCTGCAGGTCGGCCCACAGCCATCGCCCCAAGCTGGACGCCGCG CACTCTTCAGCCTCGTGCCAACACCTGCACCCCCGCTGTCTTCCTGCCTCCCTTCGGGGT CCTGTGCCTGACCTCCAGCTGCCTGCAAAATAAAGCTACGGCCCCATTCACGGCCTGGAT GTGTTTGCTGGAGAAAGGGGGAGG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 22-141, + strand, RNAz p=0.883539 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 22-141, + strand, RNAz p=0.883539 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC034287, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 22-169, gnl|bosTau2|chr18 (28368457-28368310) | |
| 22-169, gnl|canFam2|chr5 (85189675-85189544) | |
| 22-169, gnl|danRer3|chr25 (16845976-16846107) | |
| 22-169, gnl|echTel1|scaffold_318276 (40784-40653) | |
| 22-169, gnl|galGal2|chr11 (965854-965985) | |
| 22-169, gnl|hg17|chr16 (65776294-65776425) | |
| 22-169, gnl|Hg17|chr16 (65776460-65776313) | |
| 22-169, gnl|loxAfr1|scaffold_9166 (50024-50152) | |
| 22-169, gnl|mm7|chr8 (103889076-103889207) | |
| 22-169, gnl|Mm7|chr8 (103889242-103889095) | |
| 22-169, gnl|monDom2|scaffold_23 (19719551-19719424) | |
| 22-169, gnl|panTro1|chr18 (60036434-60036565) | |
| 22-169, gnl|rheMac2|chr20 (65484983-65485114) | |
| 22-169, gnl|rn3|chr19 (35110001-35110132) | |
| 300-562, gnl|bosTau2|chr18 (28368015-28367755) | |
| 300-562, gnl|canFam2|chr5 (85190262-85189865) | |
| 300-562, gnl|echTel1|scaffold_318276 (41380-40974) | |
| 300-562, gnl|galGal2|chr11 (964740-965160) | |
| 300-562, gnl|hg17|chr16 (65775705-65776104) | |
| 300-562, gnl|Hg17|chr16 (65776010-65775750) | |
| 300-562, gnl|mm7|chr8 (103888494-103888885) | |
| 300-562, gnl|Mm7|chr8 (103888791-103888531) | |
| 300-562, gnl|monDom2|scaffold_23 (19720233-19719793) | |
| 300-562, gnl|oryCun1|scaffold_200187 (18490-18908) | |
| 300-562, gnl|panTro1|chr18 (60035845-60036244) | |
| 300-562, gnl|rheMac2|chr20 (65484394-65484793) | |
| 300-562, gnl|rn3|chr19 (35109423-35109810) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-169, gnl|bosTau2|chr18 (28368457-28368310) | |
| 22-169, gnl|canFam2|chr5 (85189675-85189544) | |
| 22-169, gnl|danRer3|chr25 (16845976-16846107) | |
| 22-169, gnl|echTel1|scaffold_318276 (40784-40653) | |
| 22-169, gnl|galGal2|chr11 (965854-965985) | |
| 22-169, gnl|hg17|chr16 (65776294-65776425) | |
| 22-169, gnl|Hg17|chr16 (65776460-65776313) | |
| 22-169, gnl|loxAfr1|scaffold_9166 (50024-50152) | |
| 22-169, gnl|mm7|chr8 (103889076-103889207) | |
| 22-169, gnl|Mm7|chr8 (103889242-103889095) | |
| 22-169, gnl|monDom2|scaffold_23 (19719551-19719424) | |
| 22-169, gnl|panTro1|chr18 (60036434-60036565) | |
| 22-169, gnl|rheMac2|chr20 (65484983-65485114) | |
| 22-169, gnl|rn3|chr19 (35110001-35110132) | |
| 300-562, gnl|bosTau2|chr18 (28368015-28367755) | |
| 300-562, gnl|canFam2|chr5 (85190262-85189865) | |
| 300-562, gnl|echTel1|scaffold_318276 (41380-40974) | |
| 300-562, gnl|galGal2|chr11 (964740-965160) | |
| 300-562, gnl|hg17|chr16 (65775705-65776104) | |
| 300-562, gnl|Hg17|chr16 (65776010-65775750) | |
| 300-562, gnl|mm7|chr8 (103888494-103888885) | |
| 300-562, gnl|Mm7|chr8 (103888791-103888531) | |
| 300-562, gnl|monDom2|scaffold_23 (19720233-19719793) | |
| 300-562, gnl|oryCun1|scaffold_200187 (18490-18908) | |
| 300-562, gnl|panTro1|chr18 (60035845-60036244) | |
| 300-562, gnl|rheMac2|chr20 (65484394-65484793) | |
| 300-562, gnl|rn3|chr19 (35109423-35109810) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.136314) | |
| nmm (0.132802) |