Ss1.1-rnmm28c_o14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCAGCTGGGTCTTGTGGACTCTCTGATTCCTCTGGGGATACTGGGAAGCGTCCAGTACA CCTTCTCCAGCCTCCCGCTTGTGACTGGGGAATTCCTGGAGCTGGACCTCAATACTCTGG TTGGGGAGGCTGGCGGTGATCTCATCGACTATCCGCTGGGGCGGCCGGCCATGTCTCCCC GGCAGAAGATGCCAGAGTTGCCCCCCATGGGCGACAACACCAACTCCCAGCTGGCCATTT CTGCCAACTTCCTGGGCTCAGTGCTGACCCTCCTGCAGAAGCAAGGGGCTCTGGATATCG ACATCACTGACGGCATGTTTGAAGAGCTTCCTCCACTCACCACGTCCACGCTGGGAGCCC TGATTCCCAAGGTATTCCAGCAGTATCCCGAGTCCCGCCCCCTCACCATTAGGATCCAGG TGCCCAACCCACCTACAGTGACACTGCAGAAGGACCAGGCGCTGGTGAAGGTGTTTGCCA CCTCTGAGATCATGGTCTCCCAGCCCAATGACGTCGAGACCACCATCTGCCTCATCGACG TGGACACAGAACTCTTGGCCATGTTTTCCGTGGTGAATGATAAGCTCATGATCGACGCCA AGCTGGACAAGACCAGCCTCAACCTCAGAACTTCAAATGTGGGCAATTTGGACGTCGGCC TCATGGAGGTGCTGGTCGGGAAGATCTTTGACCTGGCGTTCATGCCCGCGATGAATGCCG TGCTGGGTTCTGGTGTCCCTCTCCCCAAAATTCTCAACATCGACTTCAGCAATGCAGACA TCGACATCTTGGAGGACCTTCTGGTGCTGAGTACTTGAATGACAGAGGCAGAGATGCTGC TGCAGCCCTGAAAGAAGCCAGAACCATCCCTGGAAAGGCTCAGCCTGTCACAGTGCCCAG CTCCACGTCCCTTCAGCCCCTCCCCATCCTTCCACTCCTCTTCTCACCTACCCTGACCAT GAGAAAGGACCCAGCCTTTGGCCCTATTGGCAAATAATCCCATCCCTGGTCGGACCCCGG CAGGGGGTAGGAGGTCACCTAGAGGACCGAGACCTCTCCGACTCCACGCTGGTACCCACC CTGCGTACGTCTTGCTCTCAATAAAAAAAAAATTCCACTTTCCCTGCAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCAGCTGGGTCTTGTGGACTCTCTGATTCCTCTGGGGATACTGGGAAGCGTCCAGTACA CCTTCTCCAGCCTCCCGCTTGTGACTGGGGAATTCCTGGAGCTGGACCTCAATACTCTGG TTGGGGAGGCTGGCGGTGATCTCATCGACTATCCGCTGGGGCGGCCGGCCATGTCTCCCC GGCAGAAGATGCCAGAGTTGCCCCCCATGGGCGACAACACCAACTCCCAGCTGGCCATTT CTGCCAACTTCCTGGGCTCAGTGCTGACCCTCCTGCAGAAGCAAGGGGCTCTGGATATCG ACATCACTGACGGCATGTTTGAAGAGCTTCCTCCACTCACCACGTCCACGCTGGGAGCCC TGATTCCCAAGGTATTCCAGCAGTATCCCGAGTCCCGCCCCCTCACCATTAGGATCCAGG TGCCCAACCCACCTACAGTGACACTGCAGAAGGACCAGGCGCTGGTGAAGGTGTTTGCCA CCTCTGAGATCATGGTCTCCCAGCCCAATGACGTCGAGACCACCATCTGCCTCATCGACG TGGACACAGAACTCTTGGCCATGTTTTCCGTGGTGAATGATAAGCTCATGATCGACGCCA AGCTGGACAAGACCAGCCTCAACCTCAGAACTTCAAATGTGGGCAATTTGGACGTCGGCC TCATGGAGGTGCTGGTCGGGAAGATCTTTGACCTGGCGTTCATGCCCGCGATGAATGCCG TGCTGGGTTCTGGTGTCCCTCTCCCCAAAATTCTCAACATCGACTTCAGCAATGCAGACA TCGACATCTTGGAGGACCTTCTGGTGCTGAGTACTTGAATGACAGAGGCAGAGATGCTGC TGCAGCCCTGAAAGAAGCCAGAACCATCCCTGGAAAGGCTCAGCCTGTCACAGTGCCCAG CTCCACGTCCCTTCAGCCCCTCCCCATCCTTCCACTCCTCTTCTCACCTACCCTGACCAT GAGAAAGGACCCAGCCTTTGGCCCTATTGGCAAATAATCCCATCCCTGGTCGGACCCCGG CAGGGGGTAGGAGGTCACCTAGAGGACCGAGACCTCTCCGACTCCACGCTGGTACCCACC CTGCGTACGTCTTGCTCTCAATAAAAAAAAAATTCCACTTTCCCTGCAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 114-317, - strand, RNAz p=0.838291 | |
| 179-298, - strand, RNAz p=0.692816 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 114-317, - strand, RNAz p=0.838291 | |
| 179-298, - strand, RNAz p=0.692816 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 114-317, gnl|bosTau2|chr13 (47110744-47110947) | |
| 114-317, gnl|canFam2|chr24 (25325059-25325323) | |
| 114-317, gnl|dasNov1|scaffold_190241 (1221-959) | |
| 114-317, gnl|echTel1|scaffold_244379 (4140-3879) | |
| 114-317, gnl|hg17|chr20 (31143882-31144135) | |
| 114-317, gnl|Hg17|chr20 (31143925-31144125) | |
| 114-317, gnl|loxAfr1|scaffold_49736 (5495-5231) | |
| 114-317, gnl|mm7|chr2 (153691020-153691257) | |
| 114-317, gnl|Mm7|chr2 (153691045-153691248) | |
| 114-317, gnl|monDom2|scaffold_6 (281401-281655) | |
| 114-317, gnl|panTro1|chr21 (33119802-33120055) | |
| 114-317, gnl|rn3|chr3 (144240603-144240840) | |
| 365-543, gnl|bosTau2|chr13 (47157910-47158088) | |
| 365-543, gnl|canFam2|chr24 (25329533-25329803) | |
| 365-543, gnl|dasNov1|scaffold_24846 (2004-2272) | |
| 365-543, gnl|echTel1|scaffold_114816 (687-941) | |
| 365-543, gnl|hg17|chr20 (31148999-31149268) | |
| 365-543, gnl|Hg17|chr20 (31149077-31149255) | |
| 365-543, gnl|loxAfr1|scaffold_49736 (1097-853) | |
| 365-543, gnl|mm7|chr2 (153695047-153695305) | |
| 365-543, gnl|Mm7|chr2 (153695114-153695292) | |
| 365-543, gnl|monDom2|scaffold_6 (284094-284357) | |
| 365-543, gnl|oryCun1|scaffold_33574 (461-724) | |
| 365-543, gnl|panTro1|chr21 (33124885-33125154) | |
| 365-543, gnl|rheMac2|chr10 (31453485-31453217) | |
| 365-543, gnl|rn3|chr3 (144244030-144244280) | |
| 793-1128, gnl|bosTau2|chr13 (47171753-47172096) | |
| 793-1128, gnl|Hg17|chr20 (31162879-31163218) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 114-317, gnl|bosTau2|chr13 (47110744-47110947) | |
| 114-317, gnl|canFam2|chr24 (25325059-25325323) | |
| 114-317, gnl|dasNov1|scaffold_190241 (1221-959) | |
| 114-317, gnl|echTel1|scaffold_244379 (4140-3879) | |
| 114-317, gnl|hg17|chr20 (31143882-31144135) | |
| 114-317, gnl|Hg17|chr20 (31143925-31144125) | |
| 114-317, gnl|loxAfr1|scaffold_49736 (5495-5231) | |
| 114-317, gnl|mm7|chr2 (153691020-153691257) | |
| 114-317, gnl|Mm7|chr2 (153691045-153691248) | |
| 114-317, gnl|monDom2|scaffold_6 (281401-281655) | |
| 114-317, gnl|panTro1|chr21 (33119802-33120055) | |
| 114-317, gnl|rn3|chr3 (144240603-144240840) | |
| 365-543, gnl|bosTau2|chr13 (47157910-47158088) | |
| 365-543, gnl|canFam2|chr24 (25329533-25329803) | |
| 365-543, gnl|dasNov1|scaffold_24846 (2004-2272) | |
| 365-543, gnl|echTel1|scaffold_114816 (687-941) | |
| 365-543, gnl|hg17|chr20 (31148999-31149268) | |
| 365-543, gnl|Hg17|chr20 (31149077-31149255) | |
| 365-543, gnl|loxAfr1|scaffold_49736 (1097-853) | |
| 365-543, gnl|mm7|chr2 (153695047-153695305) | |
| 365-543, gnl|Mm7|chr2 (153695114-153695292) | |
| 365-543, gnl|monDom2|scaffold_6 (284094-284357) | |
| 365-543, gnl|oryCun1|scaffold_33574 (461-724) | |
| 365-543, gnl|panTro1|chr21 (33124885-33125154) | |
| 365-543, gnl|rheMac2|chr10 (31453485-31453217) | |
| 365-543, gnl|rn3|chr3 (144244030-144244280) | |
| 793-1128, gnl|bosTau2|chr13 (47171753-47172096) | |
| 793-1128, gnl|Hg17|chr20 (31162879-31163218) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (1.59363) | |
| lnt (0.142308) |