Ss1.1-rnmm30c_c12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAGGACTACACGCGGGTCGTATGCCCTGTGATTGACATCATCCACCTGGACACCTTCG ACTACATCGAGTCGGCCACGGAGCTCAGAGGGGGCTTTGACTGGAGCCTCCACTTCCAAT GGGAGCAGCTCACGCCAGAGCAGAAGGCTCGGCGCCTGGACCCCACTGAGCCCATTCGGA CTCCAATCATAGCTGGAGGGCTCTTTGTGATGGACAAATCCTGGTTTGACTACCTGGGGA AATACGACACGGACATGGACATCTGGGGTGGAGAGAACTTTGAAATCTCCTTCAGAGTAT GGATGTGCGGGGGCAGCCTGGAGATCGTTCCCTGCAGCCGCGTGGGCCATGTCTTCCGCA AGAAGCACCCGTATGTCTTCCCGGATGGAAACGCCAACACGTATATAAAGAACACCAAGC GGACAGCCGAAGTGTGGATGGATGAATACAAGCAGTACTATTATGCTTCCCGGCCATTCG CCCTGGAGAGGCCCTTTGGAAACATCGAGAGCAGATTGGACCTGAGGAGGAACCTGCAGT GCCAGAGCTTCAAGTGGTACCTGGAGAATGTCTATCCAGAACTCAGAATACCCAAGGACT CCTCCATCCAGAAGGGCAACATCCGACAGAGGCAGAAGTGCCTGGAGTCTCAAAAGCAAA AGGACCAAGAGATCTCCAACCTCAGGTTAAGCCCCTGTGTCAAGATCGAAGGCAAGGATG CAAAGTCCCAGATCTGGGCCTTCACGTACACCCAGCAGATCCTCCAGGAGGAGCTCTGCC TGTCAGTTATTACCCTGTTCCCCGGCGCCCCAGTGGTTCTTGTGCTTTGCAAGAACGGAG ATGACAGACAGCAATGGACCAAGGCTGGTTCCCGAATCGAGCACGTGGCATCCCACCTCT GCCTAGACACAGACATGTTCGGGGATGGCACCGAGAATGGCAGGGAAATTGTTGTCAACC CGTGCGAGTCCTCACTCATGAGCCAGCACTGGGACATGGTGAGCTCTTGAAGATGCGTGT CGGAACCAGCGGGGGCCGTGGCATGGAGCGTCCCCCATTGAGAAGCAGACTGAGTATCTG GCTCCATGCAGCCTGCAACCACTCCAGATGCCCTGAAGCGGGAGGTGGAGCCGGAGCCCC CCAGGGCAGGAGCGGCTGTCTCAGGGAGGATCAGGAGGAGACTGCAAGCCAAGAGGACTC AGAGATCCCACGCGTTGTCAGTGCTGTTAAGTTCCAGTCCTGGCCCCGTCTGCCCCCAAA TGGTATCTGGAGACAGGGATCTGATGGGAAGGTTGATGTTCGTTGTTCCCTTTCTGACAA AAGAGGCCAGAGAGAAAAGCCTTCCTCGTTACTAGGCCAGGACTCAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAGGACTACACGCGGGTCGTATGCCCTGTGATTGACATCATCCACCTGGACACCTTCG ACTACATCGAGTCGGCCACGGAGCTCAGAGGGGGCTTTGACTGGAGCCTCCACTTCCAAT GGGAGCAGCTCACGCCAGAGCAGAAGGCTCGGCGCCTGGACCCCACTGAGCCCATTCGGA CTCCAATCATAGCTGGAGGGCTCTTTGTGATGGACAAATCCTGGTTTGACTACCTGGGGA AATACGACACGGACATGGACATCTGGGGTGGAGAGAACTTTGAAATCTCCTTCAGAGTAT GGATGTGCGGGGGCAGCCTGGAGATCGTTCCCTGCAGCCGCGTGGGCCATGTCTTCCGCA AGAAGCACCCGTATGTCTTCCCGGATGGAAACGCCAACACGTATATAAAGAACACCAAGC GGACAGCCGAAGTGTGGATGGATGAATACAAGCAGTACTATTATGCTTCCCGGCCATTCG CCCTGGAGAGGCCCTTTGGAAACATCGAGAGCAGATTGGACCTGAGGAGGAACCTGCAGT GCCAGAGCTTCAAGTGGTACCTGGAGAATGTCTATCCAGAACTCAGAATACCCAAGGACT CCTCCATCCAGAAGGGCAACATCCGACAGAGGCAGAAGTGCCTGGAGTCTCAAAAGCAAA AGGACCAAGAGATCTCCAACCTCAGGTTAAGCCCCTGTGTCAAGATCGAAGGCAAGGATG CAAAGTCCCAGATCTGGGCCTTCACGTACACCCAGCAGATCCTCCAGGAGGAGCTCTGCC TGTCAGTTATTACCCTGTTCCCCGGCGCCCCAGTGGTTCTTGTGCTTTGCAAGAACGGAG ATGACAGACAGCAATGGACCAAGGCTGGTTCCCGAATCGAGCACGTGGCATCCCACCTCT GCCTAGACACAGACATGTTCGGGGATGGCACCGAGAATGGCAGGGAAATTGTTGTCAACC CGTGCGAGTCCTCACTCATGAGCCAGCACTGGGACATGGTGAGCTCTTGAAGATGCGTGT CGGAACCAGCGGGGGCCGTGGCATGGAGCGTCCCCCATTGAGAAGCAGACTGAGTATCTG GCTCCATGCAGCCTGCAACCACTCCAGATGCCCTGAAGCGGGAGGTGGAGCCGGAGCCCC CCAGGGCAGGAGCGGCTGTCTCAGGGAGGATCAGGAGGAGACTGCAAGCCAAGAGGACTC AGAGATCCCACGCGTTGTCAGTGCTGTTAAGTTCCAGTCCTGGCCCCGTCTGCCCCCAAA TGGTATCTGGAGACAGGGATCTGATGGGAAGGTTGATGTTCGTTGTTCCCTTTCTGACAA AAGAGGCCAGAGAGAAAAGCCTTCCTCGTTACTAGGCCAGGACTCAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1088-1196, - strand, RNAz p=0.971269 | |
| 1232-1336, + strand, RNAz p=0.887489 | |
| 1247-1365, - strand, RNAz p=0.773199 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1088-1196, - strand, RNAz p=0.971269 | |
| 1232-1336, + strand, RNAz p=0.887489 | |
| 1247-1365, - strand, RNAz p=0.773199 |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 178-280, gnl|bosTau2|chr11 (49931481-49931583) | |
| 178-280, gnl|canFam2|chr17 (27666138-27666292) | |
| 178-280, gnl|danRer3|chr20 (45059559-45059412) | |
| 178-280, gnl|dasNov1|scaffold_173052 (3310-3172) | |
| 178-280, gnl|echTel1|scaffold_217233 (6109-5952) | |
| 178-280, gnl|fr1|chrUn (154740700-154740548) | |
| 178-280, gnl|galGal2|chr3 (9348517-9348672) | |
| 178-280, gnl|hg17|chr2 (31076691-31076852) | |
| 178-280, gnl|Hg17|chr2 (31076822-31076720) | |
| 178-280, gnl|loxAfr1|scaffold_54924 (34524-34397) | |
| 178-280, gnl|mm7|chr17 (71810967-71811128) | |
| 178-280, gnl|Mm7|chr17 (71811099-71810997) | |
| 178-280, gnl|monDom2|scaffold_1 (143725377-143725225) | |
| 178-280, gnl|oryCun1|scaffold_198220 (33502-33662) | |
| 178-280, gnl|panTro1|chr12 (32078187-32078344) | |
| 178-280, gnl|rheMac2|chr13 (30981366-30981523) | |
| 178-280, gnl|rn3|chr6 (21980854-21980693) | |
| 178-280, gnl|tetNig1|chrUn_random (130606100-130606234) | |
| 178-280, gnl|xenTro1|scaffold_215 (332063-332208) | |
| 282-410, gnl|bosTau2|chr11 (49943316-49943444) | |
| 282-410, gnl|canFam2|chr17 (27657370-27657530) | |
| 282-410, gnl|danRer3|chr20 (45067286-45067140) | |
| 282-410, gnl|dasNov1|scaffold_145417 (7225-7065) | |
| 282-410, gnl|echTel1|scaffold_320240 (38010-37871) | |
| 282-410, gnl|fr1|chrUn (154742742-154742587) | |
| 282-410, gnl|galGal2|chr3 (9346038-9346192) | |
| 282-410, gnl|hg17|chr2 (31066572-31066727) | |
| 282-410, gnl|Hg17|chr2 (31066712-31066584) | |
| 282-410, gnl|loxAfr1|scaffold_14873 (32263-32410) | |
| 282-410, gnl|mm7|chr17 (71800408-71800555) | |
| 282-410, gnl|Mm7|chr17 (71800540-71800412) | |
| 282-410, gnl|monDom2|scaffold_1 (143753812-143753661) | |
| 282-410, gnl|oryCun1|scaffold_194920 (8514-8371) | |
| 282-410, gnl|panTro1|chr12 (32068070-32068225) | |
| 282-410, gnl|rheMac2|chr13 (30971193-30971348) | |
| 282-410, gnl|rn3|chr6 (21992216-21992069) | |
| 282-410, gnl|tetNig1|chrUn_random (130604862-130605008) | |
| 282-410, gnl|xenTro1|scaffold_215 (320905-321051) | |
| 288-406, gnl|bosTau2|chr10 (55650011-55650129) | |
| 288-406, gnl|canFam2|chr8 (46210773-46210926) | |
| 288-406, gnl|danRer3|chrNA (23968158-23968299) | |
| 288-406, gnl|dasNov1|scaffold_145417 (7072-7212) | |
| 288-406, gnl|echTel1|scaffold_320240 (37870-38029) | |
| 288-406, gnl|fr1|chrUn (154742597-154742741) | |
| 288-406, gnl|galGal2|chr5 (24961220-24961080) | |
| 288-406, gnl|hg17|chr14 (68875114-68875273) | |
| 288-406, gnl|Hg17|chr14 (68875126-68875244) | |
| 288-406, gnl|loxAfr1|scaffold_14873 (32403-32263) | |
| 288-406, gnl|mm7|chr12 (78551238-78551408) | |
| 288-406, gnl|Mm7|chr12 (78551250-78551368) | |
| 288-406, gnl|monDom2|scaffold_8 (85943450-85943610) | |
| 288-406, gnl|oryCun1|scaffold_194920 (8366-8525) | |
| 288-406, gnl|panTro1|chr15 (68550177-68550336) | |
| 288-406, gnl|rheMac2|chr7 (132469213-132469372) | |
| 288-406, gnl|rn3|chr6 (104356385-104356556) | |
| 288-406, gnl|tetNig1|chr10 (11737278-11737138) | |
| 288-406, gnl|xenTro1|scaffold_117 (464571-464431) | |
| 591-731, gnl|bosTau2|chr11 (49951054-49951194) | |
| 591-731, gnl|Hg17|chr2 (31058776-31058636) | |
| 591-731, gnl|Mm7|chr17 (71793362-71793228) | |
| 849-1365, gnl|bosTau2|chr11 (49962379-49962906) | |
| 849-1365, gnl|canFam2|chr17 (27638126-27638521) | |
| 849-1365, gnl|echTel1|scaffold_113398 (1414-1026) | |
| 849-1365, gnl|hg17|chr2 (31045024-31045428) | |
| 849-1365, gnl|Hg17|chr2 (31045579-31045052) | |
| 849-1365, gnl|loxAfr1|scaffold_18220 (1003-598) | |
| 849-1365, gnl|mm7|chr17 (71782162-71782560) | |
| 849-1365, gnl|Mm7|chr17 (71782711-71782190) | |
| 849-1365, gnl|monDom2|scaffold_1 (143790756-143790262) | |
| 849-1365, gnl|oryCun1|scaffold_198220 (8924-9288) | |
| 849-1365, gnl|panTro1|chr12_random (14415650-14415246) | |
| 849-1365, gnl|rheMac2|chr13 (30950761-30951169) | |
| 849-1365, gnl|rn3|chr6 (22010502-22010100) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 178-280, gnl|bosTau2|chr11 (49931481-49931583) | |
| 178-280, gnl|canFam2|chr17 (27666138-27666292) | |
| 178-280, gnl|danRer3|chr20 (45059559-45059412) | |
| 178-280, gnl|dasNov1|scaffold_173052 (3310-3172) | |
| 178-280, gnl|echTel1|scaffold_217233 (6109-5952) | |
| 178-280, gnl|fr1|chrUn (154740700-154740548) | |
| 178-280, gnl|galGal2|chr3 (9348517-9348672) | |
| 178-280, gnl|hg17|chr2 (31076691-31076852) | |
| 178-280, gnl|Hg17|chr2 (31076822-31076720) | |
| 178-280, gnl|loxAfr1|scaffold_54924 (34524-34397) | |
| 178-280, gnl|mm7|chr17 (71810967-71811128) | |
| 178-280, gnl|Mm7|chr17 (71811099-71810997) | |
| 178-280, gnl|monDom2|scaffold_1 (143725377-143725225) | |
| 178-280, gnl|oryCun1|scaffold_198220 (33502-33662) | |
| 178-280, gnl|panTro1|chr12 (32078187-32078344) | |
| 178-280, gnl|rheMac2|chr13 (30981366-30981523) | |
| 178-280, gnl|rn3|chr6 (21980854-21980693) | |
| 178-280, gnl|tetNig1|chrUn_random (130606100-130606234) | |
| 178-280, gnl|xenTro1|scaffold_215 (332063-332208) | |
| 282-410, gnl|bosTau2|chr11 (49943316-49943444) | |
| 282-410, gnl|canFam2|chr17 (27657370-27657530) | |
| 282-410, gnl|danRer3|chr20 (45067286-45067140) | |
| 282-410, gnl|dasNov1|scaffold_145417 (7225-7065) | |
| 282-410, gnl|echTel1|scaffold_320240 (38010-37871) | |
| 282-410, gnl|fr1|chrUn (154742742-154742587) | |
| 282-410, gnl|galGal2|chr3 (9346038-9346192) | |
| 282-410, gnl|hg17|chr2 (31066572-31066727) | |
| 282-410, gnl|Hg17|chr2 (31066712-31066584) | |
| 282-410, gnl|loxAfr1|scaffold_14873 (32263-32410) | |
| 282-410, gnl|mm7|chr17 (71800408-71800555) | |
| 282-410, gnl|Mm7|chr17 (71800540-71800412) | |
| 282-410, gnl|monDom2|scaffold_1 (143753812-143753661) | |
| 282-410, gnl|oryCun1|scaffold_194920 (8514-8371) | |
| 282-410, gnl|panTro1|chr12 (32068070-32068225) | |
| 282-410, gnl|rheMac2|chr13 (30971193-30971348) | |
| 282-410, gnl|rn3|chr6 (21992216-21992069) | |
| 282-410, gnl|tetNig1|chrUn_random (130604862-130605008) | |
| 282-410, gnl|xenTro1|scaffold_215 (320905-321051) | |
| 288-406, gnl|bosTau2|chr10 (55650011-55650129) | |
| 288-406, gnl|canFam2|chr8 (46210773-46210926) | |
| 288-406, gnl|danRer3|chrNA (23968158-23968299) | |
| 288-406, gnl|dasNov1|scaffold_145417 (7072-7212) | |
| 288-406, gnl|echTel1|scaffold_320240 (37870-38029) | |
| 288-406, gnl|fr1|chrUn (154742597-154742741) | |
| 288-406, gnl|galGal2|chr5 (24961220-24961080) | |
| 288-406, gnl|hg17|chr14 (68875114-68875273) | |
| 288-406, gnl|Hg17|chr14 (68875126-68875244) | |
| 288-406, gnl|loxAfr1|scaffold_14873 (32403-32263) | |
| 288-406, gnl|mm7|chr12 (78551238-78551408) | |
| 288-406, gnl|Mm7|chr12 (78551250-78551368) | |
| 288-406, gnl|monDom2|scaffold_8 (85943450-85943610) | |
| 288-406, gnl|oryCun1|scaffold_194920 (8366-8525) | |
| 288-406, gnl|panTro1|chr15 (68550177-68550336) | |
| 288-406, gnl|rheMac2|chr7 (132469213-132469372) | |
| 288-406, gnl|rn3|chr6 (104356385-104356556) | |
| 288-406, gnl|tetNig1|chr10 (11737278-11737138) | |
| 288-406, gnl|xenTro1|scaffold_117 (464571-464431) | |
| 591-731, gnl|bosTau2|chr11 (49951054-49951194) | |
| 591-731, gnl|Hg17|chr2 (31058776-31058636) | |
| 591-731, gnl|Mm7|chr17 (71793362-71793228) | |
| 849-1365, gnl|bosTau2|chr11 (49962379-49962906) | |
| 849-1365, gnl|canFam2|chr17 (27638126-27638521) | |
| 849-1365, gnl|echTel1|scaffold_113398 (1414-1026) | |
| 849-1365, gnl|hg17|chr2 (31045024-31045428) | |
| 849-1365, gnl|Hg17|chr2 (31045579-31045052) | |
| 849-1365, gnl|loxAfr1|scaffold_18220 (1003-598) | |
| 849-1365, gnl|mm7|chr17 (71782162-71782560) | |
| 849-1365, gnl|Mm7|chr17 (71782711-71782190) | |
| 849-1365, gnl|monDom2|scaffold_1 (143790756-143790262) | |
| 849-1365, gnl|oryCun1|scaffold_198220 (8924-9288) | |
| 849-1365, gnl|panTro1|chr12_random (14415650-14415246) | |
| 849-1365, gnl|rheMac2|chr13 (30950761-30951169) | |
| 849-1365, gnl|rn3|chr6 (22010502-22010100) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| fbs (0.175346) | |
| nmm (0.132802) |