Non-Coding RNA Search

Ss1.1-rnmm30c_d19.5

Sequence:


               
               GGGAATTGTAAGGCTGGCTCTACTGACCTGAGGGAGATGGTGAGTCTGGATCTGCAAGGG
GGACACTGGTGCCTCCGGACAGCTGTGAAAGCAAGAATATGACCACAGAGCAAAGTGAAA
TAGAAGTTCTGTGAAAGGAAAGCTAAGACATTTTGACGTGAACCATGTTGCCTTCTGCGC
TAAGGTTTCTGGTGGTGCCTTTAAAGTTTAAAGGGACCAGCACTGCGCTGAGAGTCTGAG
TGAGGAAGCAGAGCTCAGCACACCTCTCCGCTGGCTTGCAGGGTATACTCACTCCAGCAC
ATCAAGCCACCGGGGACTGCACGGCCAGCCGCTGCTCAAACAGGAGGTGGTGTTAATTTT
GAAAATGATCCACGCTGTAATGTCATGAACCAGGAAGCTGGAAGCCTTCACCAGCTCTTT
ATGCAAATATTTGGCTGCAGCTTGAGCTCAAGCACTTGGAAGGAATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAATTGTAAGGCTGGCTCTACTGACCTGAGGGAGATGGTGAGTCTGGATCTGCAAGGG
GGACACTGGTGCCTCCGGACAGCTGTGAAAGCAAGAATATGACCACAGAGCAAAGTGAAA
TAGAAGTTCTGTGAAAGGAAAGCTAAGACATTTTGACGTGAACCATGTTGCCTTCTGCGC
TAAGGTTTCTGGTGGTGCCTTTAAAGTTTAAAGGGACCAGCACTGCGCTGAGAGTCTGAG
TGAGGAAGCAGAGCTCAGCACACCTCTCCGCTGGCTTGCAGGGTATACTCACTCCAGCAC
ATCAAGCCACCGGGGACTGCACGGCCAGCCGCTGCTCAAACAGGAGGTGGTGTTAATTTT
GAAAATGATCCACGCTGTAATGTCATGAACCAGGAAGCTGGAAGCCTTCACCAGCTCTTT
ATGCAAATATTTGGCTGCAGCTTGAGCTCAAGCACTTGGAAGGAATGG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-186, gnl|bosTau2|chr7 (38334494-38334676)
               

               
               1-186, gnl|Hg17|chr11 (110680945-110680761)
               

               
               1-186, gnl|Mm7|chr9 (51252436-51252623)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr7 (38334494-38334676)
               

               
               1-186, gnl|Hg17|chr11 (110680945-110680761)
               

               
               1-186, gnl|Mm7|chr9 (51252436-51252623)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               nmm (0.132802)

	1-186, gnl\|bosTau2\|chr7 (38334494-38334676)
	1-186, gnl\|Hg17\|chr11 (110680945-110680761)
	1-186, gnl\|Mm7\|chr9 (51252436-51252623)