Ss1.1-rnmm30c_k18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTGGAGCCATGACCCCGCAGTTCTGGGCCTCCTGTCTTTTCTCACTGTGCCTGGTTGG CTTCGCTCAGCTGATCCCAAAGGAGCAAAAGATGAAGATGGATTGCTACAAGGGGGTGAC AGGCACCATCTATGAGTATGGAGCCCTCACCCTCAATGGCGAGGAGTACATCCCGTTCAA GCAGTACGCAGGCAAACACGTCCTCTTTGTCAACGTGGCCACCTATTGAGGCTTGACAGC TCAGTATCCTGAACTGAATGCACTACAAGAGGAGCTGAAGCCTTTTGGTGTAGTTGTGTT GGGCTTTCCCTGCAACCAATTTGGAAAACAAGAACCAGCAAAGAACTCAGAGATTCTTTT GGGGCTCAAATATGTGCGTCCAGGTGGTGGCTTTGTTCCCAATTTTCAGCTCTTTGAGAA AGGGGATGTAAATGGAGAAAAAGAACAGAAGGTCTTTACCTTCCTGAAGAACTCCTGCCC TCCAACCTCTGATCTTTTGGGCTCATCAAACCAACTCTTCTGGGAGCCCATGAAGGTCCA TGACATTCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCCTGATGGAGTCCCTGTTATGCG CTGGTACCACCGGGCTTCAGTCAGCACAGTCAAGTCAGATATCATGGAGTACCTGAAGCA GTTCAAAAGCGAATAGGAAAGGCCAGAGACCATCAGGAAGTTGCCTCCCACCTGAAGAAC ACATTTAAGGATCCATATTTGTTCCAGATGCCTACTCAGCCTCCACATGATCAAGCCATC TTGTACTGCCCAAATACCTATGTGTGTGTGCATATGTGTGTGTGTGTGTGTGTGTGTGTG TGAGTGAGAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTGGAGCCATGACCCCGCAGTTCTGGGCCTCCTGTCTTTTCTCACTGTGCCTGGTTGG CTTCGCTCAGCTGATCCCAAAGGAGCAAAAGATGAAGATGGATTGCTACAAGGGGGTGAC AGGCACCATCTATGAGTATGGAGCCCTCACCCTCAATGGCGAGGAGTACATCCCGTTCAA GCAGTACGCAGGCAAACACGTCCTCTTTGTCAACGTGGCCACCTATTGAGGCTTGACAGC TCAGTATCCTGAACTGAATGCACTACAAGAGGAGCTGAAGCCTTTTGGTGTAGTTGTGTT GGGCTTTCCCTGCAACCAATTTGGAAAACAAGAACCAGCAAAGAACTCAGAGATTCTTTT GGGGCTCAAATATGTGCGTCCAGGTGGTGGCTTTGTTCCCAATTTTCAGCTCTTTGAGAA AGGGGATGTAAATGGAGAAAAAGAACAGAAGGTCTTTACCTTCCTGAAGAACTCCTGCCC TCCAACCTCTGATCTTTTGGGCTCATCAAACCAACTCTTCTGGGAGCCCATGAAGGTCCA TGACATTCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCCTGATGGAGTCCCTGTTATGCG CTGGTACCACCGGGCTTCAGTCAGCACAGTCAAGTCAGATATCATGGAGTACCTGAAGCA GTTCAAAAGCGAATAGGAAAGGCCAGAGACCATCAGGAAGTTGCCTCCCACCTGAAGAAC ACATTTAAGGATCCATATTTGTTCCAGATGCCTACTCAGCCTCCACATGATCAAGCCATC TTGTACTGCCCAAATACCTATGTGTGTGTGCATATGTGTGTGTGTGTGTGTGTGTGTGTG TGAGTGAGAGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 468-655, - strand, RNAz p=0.964871 | |
| 504-655, + strand, RNAz p=0.74256 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 468-655, - strand, RNAz p=0.964871 | |
| 504-655, + strand, RNAz p=0.74256 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 93-246, gnl|bosTau2|chr7 (42934388-42934541) | |
| 93-246, gnl|Hg17|chr5 (150385089-150385242) | |
| 93-246, gnl|Mm7|chr11 (54863879-54864032) | |
| 247-357, gnl|bosTau2|chr7 (42935752-42935862) | |
| 247-357, gnl|canFam2|chr4 (61406161-61405983) | |
| 247-357, gnl|danRer3|chrNA (225592393-225592247) | |
| 247-357, gnl|dasNov1|scaffold_214896 (3838-3665) | |
| 247-357, gnl|echTel1|scaffold_316288 (122118-121944) | |
| 247-357, gnl|fr1|chrUn (109798148-109798008) | |
| 247-357, gnl|galGal2|chr13 (12003420-12003263) | |
| 247-357, gnl|hg17|chr5 (150386625-150386800) | |
| 247-357, gnl|Hg17|chr5 (150386649-150386759) | |
| 247-357, gnl|loxAfr1|scaffold_11770 (25080-24906) | |
| 247-357, gnl|mm7|chr11 (54865270-54865439) | |
| 247-357, gnl|Mm7|chr11 (54865293-54865403) | |
| 247-357, gnl|monDom2|scaffold_6 (55511027-55510861) | |
| 247-357, gnl|oryCun1|scaffold_117393 (3581-3742) | |
| 247-357, gnl|panTro1|chr4 (157338536-157338711) | |
| 247-357, gnl|rheMac2|chr6 (147440223-147440398) | |
| 247-357, gnl|rn3|chr10 (40331132-40331301) | |
| 247-357, gnl|tetNig1|chr1 (2500328-2500186) | |
| 468-655, gnl|bosTau2|chr7 (42936842-42937029) | |
| 468-655, gnl|canFam2|chr4 (61405039-61404865) | |
| 468-655, gnl|danRer3|chrNA (225587873-225587696) | |
| 468-655, gnl|dasNov1|scaffold_8348 (42301-42475) | |
| 468-655, gnl|echTel1|scaffold_316288 (121130-120956) | |
| 468-655, gnl|fr1|chrUn (109797322-109797145) | |
| 468-655, gnl|galGal2|chr13 (12002892-12002717) | |
| 468-655, gnl|hg17|chr5 (150387662-150387836) | |
| 468-655, gnl|Hg17|chr5 (150387661-150387848) | |
| 468-655, gnl|loxAfr1|scaffold_3138 (36219-36393) | |
| 468-655, gnl|mm7|chr11 (54866193-54866367) | |
| 468-655, gnl|Mm7|chr11 (54866192-54866379) | |
| 468-655, gnl|monDom2|scaffold_6 (55508734-55508560) | |
| 468-655, gnl|oryCun1|scaffold_117393 (4306-4480) | |
| 468-655, gnl|panTro1|chr4 (157339579-157339753) | |
| 468-655, gnl|rheMac2|chr6 (147441268-147441442) | |
| 468-655, gnl|rn3|chr10 (40332060-40332234) | |
| 468-655, gnl|tetNig1|chr1 (2499318-2499141) | |
| 468-655, gnl|xenTro1|scaffold_261 (658645-658822) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 93-246, gnl|bosTau2|chr7 (42934388-42934541) | |
| 93-246, gnl|Hg17|chr5 (150385089-150385242) | |
| 93-246, gnl|Mm7|chr11 (54863879-54864032) | |
| 247-357, gnl|bosTau2|chr7 (42935752-42935862) | |
| 247-357, gnl|canFam2|chr4 (61406161-61405983) | |
| 247-357, gnl|danRer3|chrNA (225592393-225592247) | |
| 247-357, gnl|dasNov1|scaffold_214896 (3838-3665) | |
| 247-357, gnl|echTel1|scaffold_316288 (122118-121944) | |
| 247-357, gnl|fr1|chrUn (109798148-109798008) | |
| 247-357, gnl|galGal2|chr13 (12003420-12003263) | |
| 247-357, gnl|hg17|chr5 (150386625-150386800) | |
| 247-357, gnl|Hg17|chr5 (150386649-150386759) | |
| 247-357, gnl|loxAfr1|scaffold_11770 (25080-24906) | |
| 247-357, gnl|mm7|chr11 (54865270-54865439) | |
| 247-357, gnl|Mm7|chr11 (54865293-54865403) | |
| 247-357, gnl|monDom2|scaffold_6 (55511027-55510861) | |
| 247-357, gnl|oryCun1|scaffold_117393 (3581-3742) | |
| 247-357, gnl|panTro1|chr4 (157338536-157338711) | |
| 247-357, gnl|rheMac2|chr6 (147440223-147440398) | |
| 247-357, gnl|rn3|chr10 (40331132-40331301) | |
| 247-357, gnl|tetNig1|chr1 (2500328-2500186) | |
| 468-655, gnl|bosTau2|chr7 (42936842-42937029) | |
| 468-655, gnl|canFam2|chr4 (61405039-61404865) | |
| 468-655, gnl|danRer3|chrNA (225587873-225587696) | |
| 468-655, gnl|dasNov1|scaffold_8348 (42301-42475) | |
| 468-655, gnl|echTel1|scaffold_316288 (121130-120956) | |
| 468-655, gnl|fr1|chrUn (109797322-109797145) | |
| 468-655, gnl|galGal2|chr13 (12002892-12002717) | |
| 468-655, gnl|hg17|chr5 (150387662-150387836) | |
| 468-655, gnl|Hg17|chr5 (150387661-150387848) | |
| 468-655, gnl|loxAfr1|scaffold_3138 (36219-36393) | |
| 468-655, gnl|mm7|chr11 (54866193-54866367) | |
| 468-655, gnl|Mm7|chr11 (54866192-54866379) | |
| 468-655, gnl|monDom2|scaffold_6 (55508734-55508560) | |
| 468-655, gnl|oryCun1|scaffold_117393 (4306-4480) | |
| 468-655, gnl|panTro1|chr4 (157339579-157339753) | |
| 468-655, gnl|rheMac2|chr6 (147441268-147441442) | |
| 468-655, gnl|rn3|chr10 (40332060-40332234) | |
| 468-655, gnl|tetNig1|chr1 (2499318-2499141) | |
| 468-655, gnl|xenTro1|scaffold_261 (658645-658822) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (1.19522) |