Ss1.1-rnmm31c_f1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGAACGAAGCCGGCCCGCGCGGGCCCGCGCTCCCCTCCTCCCCCGCGGCCGCACTCAC CCGCTCCGGATTCAGCCCCGTCGCCCCCGCCCGCACTCCAGAGCCGGCTGAGAACGGCAG CGGCGCGGGCTCCACGTGCAGCGTCTCTCCCGGCACCCCCGGGTCCGGGACTACAACTCC CAGCAGGTTGTGCGAAACGGACACTCTAGGCTACGGGGGCTCGCGAGGCACAGAGCCGTC GCTGGCTCTGGCAGCTCGGGACTGAGTACAAGTAGCAGAATCACCATGATTCTTCAGAGG CTCTTCAGACTGTCCTCTGTCATTCAGTCTGCAGTCTCGGTCTCTTTGAGGAGAAACATT GGTGTTACAGCGGTGGCATTTAATAAGGAGCTCGATCCTGTGCAGAAGCTCTTCGTGGAC AAGATTAGAGAATACAGAACTAAGCGACAGACATCTGGAGGACCTGTTGATGCTGGCCCT GAGTATCAGCAGGACCTCGACAGGGAGCTTTTTAAGCTTAAGCAAATGTATGGTAAAGCA GACATGAATACGTTCCCTAACTTCACATTTGAAGACCCCAAATTTGAAGCCGTCGAAAAA CCACAGTCCTGAAGAAATAATGTAAAATTTATCTGGTAATTCGTTAGATTAGTCGTACAA CTGATCAGACGTATCAAAATAAATGTACATTTCACAACAAAAAAAAAAAAAAAAAAAAAA TCCAAATAAATTATTGGGTAGTGTTTGGTGTACACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGAACGAAGCCGGCCCGCGCGGGCCCGCGCTCCCCTCCTCCCCCGCGGCCGCACTCAC CCGCTCCGGATTCAGCCCCGTCGCCCCCGCCCGCACTCCAGAGCCGGCTGAGAACGGCAG CGGCGCGGGCTCCACGTGCAGCGTCTCTCCCGGCACCCCCGGGTCCGGGACTACAACTCC CAGCAGGTTGTGCGAAACGGACACTCTAGGCTACGGGGGCTCGCGAGGCACAGAGCCGTC GCTGGCTCTGGCAGCTCGGGACTGAGTACAAGTAGCAGAATCACCATGATTCTTCAGAGG CTCTTCAGACTGTCCTCTGTCATTCAGTCTGCAGTCTCGGTCTCTTTGAGGAGAAACATT GGTGTTACAGCGGTGGCATTTAATAAGGAGCTCGATCCTGTGCAGAAGCTCTTCGTGGAC AAGATTAGAGAATACAGAACTAAGCGACAGACATCTGGAGGACCTGTTGATGCTGGCCCT GAGTATCAGCAGGACCTCGACAGGGAGCTTTTTAAGCTTAAGCAAATGTATGGTAAAGCA GACATGAATACGTTCCCTAACTTCACATTTGAAGACCCCAAATTTGAAGCCGTCGAAAAA CCACAGTCCTGAAGAAATAATGTAAAATTTATCTGGTAATTCGTTAGATTAGTCGTACAA CTGATCAGACGTATCAAAATAAATGTACATTTCACAACAAAAAAAAAAAAAAAAAAAAAA TCCAAATAAATTATTGGGTAGTGTTTGGTGTACACT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 1-153, gnl|bosTau2|chr1 (8000614-8000462) | |
| 1-153, gnl|Hg17|chr21 (26029820-26029668) | |
| 1-153, gnl|Mm7|chr16 (84834190-84834038) | |
| 273-450, gnl|bosTau2|chr1 (7996463-7996286) | |
| 273-450, gnl|canFam2|chr31 (24229993-24230199) | |
| 273-450, gnl|canFam2|chr4 (63827366-63827197) | |
| 273-450, gnl|danRer3|chr24 (3265080-3265295) | |
| 273-450, gnl|dasNov1|scaffold_16959 (6153-6335) | |
| 273-450, gnl|dasNov1|scaffold_280 (158949-158780) | |
| 273-450, gnl|echTel1|scaffold_286384 (94216-94408) | |
| 273-450, gnl|echTel1|scaffold_306666 (4696-4529) | |
| 273-450, gnl|galGal2|chr1 (96321218-96321415) | |
| 273-450, gnl|hg17|chr21 (26023774-26023977) | |
| 273-450, gnl|Hg17|chr21 (26023989-26023812) | |
| 273-450, gnl|hg17|chr5 (73135018-73135187) | |
| 273-450, gnl|loxAfr1|scaffold_15921 (1589-1382) | |
| 273-450, gnl|loxAfr1|scaffold_15921 (1546-1376) | |
| 273-450, gnl|mm7|chr16 (84829874-84830081) | |
| 273-450, gnl|mm7|chr16 (84829922-84830088) | |
| 273-450, gnl|Mm7|chr16 (84830092-84829916) | |
| 273-450, gnl|monDom2|scaffold_29 (7542316-7542115) | |
| 273-450, gnl|monDom2|scaffold_4 (126943820-126943651) | |
| 273-450, gnl|oryCun1|scaffold_198374 (188651-188480) | |
| 273-450, gnl|oryCun1|scaffold_215112 (21833-21636) | |
| 273-450, gnl|panTro1|chr22 (26000086-26000289) | |
| 273-450, gnl|panTro1|chr4 (42329558-42329389) | |
| 273-450, gnl|rheMac2|chr3 (20941220-20941017) | |
| 273-450, gnl|rheMac2|chr6 (69997117-69997286) | |
| 273-450, gnl|rn3|chr10 (82324624-82324794) | |
| 273-450, gnl|rn3|chr11 (24319956-24320163) | |
| 273-450, gnl|tetNig1|chr3 (5912540-5912361) | |
| 273-450, gnl|tetNig1|chr3 (5912525-5912355) | |
| 273-450, gnl|xenTro1|scaffold_114 (840922-841121) | |
| 568-754, gnl|bosTau2|chr1 (7992849-7992662) | |
| 568-754, gnl|canFam2|chr31 (24225060-24225220) | |
| 568-754, gnl|dasNov1|scaffold_16959 (407-558) | |
| 568-754, gnl|echTel1|scaffold_286384 (91249-91396) | |
| 568-754, gnl|hg17|chr21 (26018671-26018821) | |
| 568-754, gnl|Hg17|chr21 (26018866-26018675) | |
| 568-754, gnl|mm7|chr16 (84826430-84826545) | |
| 568-754, gnl|monDom2|scaffold_29 (7552792-7552617) | |
| 568-754, gnl|oryCun1|scaffold_53616 (896-753) | |
| 568-754, gnl|panTro1|chr22 (25994213-25994363) | |
| 568-754, gnl|rheMac2|chr3 (20946284-20946134) | |
| 568-754, gnl|rn3|chr11 (24316704-24316830) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-153, gnl|bosTau2|chr1 (8000614-8000462) | |
| 1-153, gnl|Hg17|chr21 (26029820-26029668) | |
| 1-153, gnl|Mm7|chr16 (84834190-84834038) | |
| 273-450, gnl|bosTau2|chr1 (7996463-7996286) | |
| 273-450, gnl|canFam2|chr31 (24229993-24230199) | |
| 273-450, gnl|canFam2|chr4 (63827366-63827197) | |
| 273-450, gnl|danRer3|chr24 (3265080-3265295) | |
| 273-450, gnl|dasNov1|scaffold_16959 (6153-6335) | |
| 273-450, gnl|dasNov1|scaffold_280 (158949-158780) | |
| 273-450, gnl|echTel1|scaffold_286384 (94216-94408) | |
| 273-450, gnl|echTel1|scaffold_306666 (4696-4529) | |
| 273-450, gnl|galGal2|chr1 (96321218-96321415) | |
| 273-450, gnl|hg17|chr21 (26023774-26023977) | |
| 273-450, gnl|Hg17|chr21 (26023989-26023812) | |
| 273-450, gnl|hg17|chr5 (73135018-73135187) | |
| 273-450, gnl|loxAfr1|scaffold_15921 (1589-1382) | |
| 273-450, gnl|loxAfr1|scaffold_15921 (1546-1376) | |
| 273-450, gnl|mm7|chr16 (84829874-84830081) | |
| 273-450, gnl|mm7|chr16 (84829922-84830088) | |
| 273-450, gnl|Mm7|chr16 (84830092-84829916) | |
| 273-450, gnl|monDom2|scaffold_29 (7542316-7542115) | |
| 273-450, gnl|monDom2|scaffold_4 (126943820-126943651) | |
| 273-450, gnl|oryCun1|scaffold_198374 (188651-188480) | |
| 273-450, gnl|oryCun1|scaffold_215112 (21833-21636) | |
| 273-450, gnl|panTro1|chr22 (26000086-26000289) | |
| 273-450, gnl|panTro1|chr4 (42329558-42329389) | |
| 273-450, gnl|rheMac2|chr3 (20941220-20941017) | |
| 273-450, gnl|rheMac2|chr6 (69997117-69997286) | |
| 273-450, gnl|rn3|chr10 (82324624-82324794) | |
| 273-450, gnl|rn3|chr11 (24319956-24320163) | |
| 273-450, gnl|tetNig1|chr3 (5912540-5912361) | |
| 273-450, gnl|tetNig1|chr3 (5912525-5912355) | |
| 273-450, gnl|xenTro1|scaffold_114 (840922-841121) | |
| 568-754, gnl|bosTau2|chr1 (7992849-7992662) | |
| 568-754, gnl|canFam2|chr31 (24225060-24225220) | |
| 568-754, gnl|dasNov1|scaffold_16959 (407-558) | |
| 568-754, gnl|echTel1|scaffold_286384 (91249-91396) | |
| 568-754, gnl|hg17|chr21 (26018671-26018821) | |
| 568-754, gnl|Hg17|chr21 (26018866-26018675) | |
| 568-754, gnl|mm7|chr16 (84826430-84826545) | |
| 568-754, gnl|monDom2|scaffold_29 (7552792-7552617) | |
| 568-754, gnl|oryCun1|scaffold_53616 (896-753) | |
| 568-754, gnl|panTro1|chr22 (25994213-25994363) | |
| 568-754, gnl|rheMac2|chr3 (20946284-20946134) | |
| 568-754, gnl|rn3|chr11 (24316704-24316830) |
| Expressed library(ies): 76 entry(ies) | More info |
| Expressed library(ies): 76 entry(ies) | Help | Less info |
| sto (3.59648) | |
| sme (2.74893) | |
| che (2.58997) | |
| mas (2.10305) | |
| spc (2.04059) | |
| vin (1.99534) | |
| bfe (1.49858) | |
| cmu (1.49115) | |
| ssp (1.49072) | |
| cki (1.48711) | |
| cbe (1.43541) | |
| rec (1.38456) | |
| aor (1.36692) | |
| nms (1.28315) | |
| cst (1.12029) | |
| isp (1.05263) | |
| cut (1.01954) | |
| mga (0.96123) | |
| mgp (0.922722) | |
| hyp (0.85702) | |
| csk (0.844476) | |
| hlv (0.835538) | |
| amn (0.835422) | |
| hea (0.817996) | |
| nlu (0.766724) | |
| sag (0.730861) | |
| fbs (0.701385) | |
| nca (0.684369) | |
| kid (0.648677) | |
| nco (0.646935) | |
| col (0.585023) | |
| ecc (0.575175) | |
| nmm (0.531209) | |
| fty (0.527519) | |
| sin (0.524843) | |
| ova (0.516529) | |
| mcp (0.511945) | |
| fhi (0.508733) | |
| cje (0.495704) | |
| eje (0.494169) | |
| eep (0.490256) | |
| ece (0.45861) | |
| fat (0.442282) | |
| pty (0.428143) | |
| fcc (0.39557) | |
| ldo (0.38801) | |
| ill (0.351185) | |
| nje (0.33184) | |
| csp (0.322373) | |
| fco (0.314416) | |
| cte (0.29274) | |
| fce (0.271592) | |
| cov (0.264306) | |
| sug (0.254582) | |
| ebs (0.236602) | |
| tes (0.207814) | |
| fli (0.202881) | |
| jej (0.197844) | |
| mgm (0.180343) | |
| ton (0.1755) | |
| duo (0.172801) | |
| eye (0.170503) | |
| eli (0.151814) | |
| cag (0.151194) | |
| ski (0.146735) | |
| spl (0.143184) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 76 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (3.59648) | |
| sme (2.74893) | |
| che (2.58997) | |
| mas (2.10305) | |
| spc (2.04059) | |
| vin (1.99534) | |
| bfe (1.49858) | |
| cmu (1.49115) | |
| ssp (1.49072) | |
| cki (1.48711) | |
| cbe (1.43541) | |
| rec (1.38456) | |
| aor (1.36692) | |
| nms (1.28315) | |
| cst (1.12029) | |
| isp (1.05263) | |
| cut (1.01954) | |
| mga (0.96123) | |
| mgp (0.922722) | |
| hyp (0.85702) | |
| csk (0.844476) | |
| hlv (0.835538) | |
| amn (0.835422) | |
| hea (0.817996) | |
| nlu (0.766724) | |
| sag (0.730861) | |
| fbs (0.701385) | |
| nca (0.684369) | |
| kid (0.648677) | |
| nco (0.646935) | |
| col (0.585023) | |
| ecc (0.575175) | |
| nmm (0.531209) | |
| fty (0.527519) | |
| sin (0.524843) | |
| ova (0.516529) | |
| mcp (0.511945) | |
| fhi (0.508733) | |
| cje (0.495704) | |
| eje (0.494169) | |
| eep (0.490256) | |
| ece (0.45861) | |
| fat (0.442282) | |
| pty (0.428143) | |
| fcc (0.39557) | |
| ldo (0.38801) | |
| ill (0.351185) | |
| nje (0.33184) | |
| csp (0.322373) | |
| fco (0.314416) | |
| cte (0.29274) | |
| fce (0.271592) | |
| cov (0.264306) | |
| sug (0.254582) | |
| ebs (0.236602) | |
| tes (0.207814) | |
| fli (0.202881) | |
| jej (0.197844) | |
| mgm (0.180343) | |
| ton (0.1755) | |
| duo (0.172801) | |
| eye (0.170503) | |
| eli (0.151814) | |
| cag (0.151194) | |
| ski (0.146735) | |
| spl (0.143184) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |