Non-Coding RNA Search

Ss1.1-rnmm31c_j3.5

Sequence:


               
               GTCACCCCTCAGGAAAAATCAGTTGCCGGTGTCCAACAAGGTCGATGAGGAGCTGGCTGT
GCTTCAGATTGAGGATGTGGAGGATGAATTGGTAAAGGAAGAAGTCATCCTGTCTCCAGT
CCCATCAATGCTCAAGCTGCAAGTAGCGTCAAAGCCCATCGACCTCTCAGTGGCAAAGGA
CATAAAGACCCTTCTGTTTGGGTCCAGCCTTTGCTGTTTCAATGAAGAATGGAAACTTCA
GAGTTTTGCCTTTAATGACGCAGCCTCGTTAAAATATGGCATTGTGCAGAACAAGGGTGG
TCCCTGCGGGGTTCTGGCGGCTGTCCAAGGCTGTGTCCTACAGAAGCTCCTGTTTGAAGG
AGATAGTGGAGCCAGCTGCGCTCGGCAGCTGCAGCCTTCAAACGCTCACAGGACCCACTG
CTTGGCCCTGGCCATCGCAGACATTGTGTGGCGGGCCGGGGGCCACGAGAGAGCCATGGT
CACACTGGCTTCGGGAACACAGCAGTTCAGTCCAGCGGGGAAATACAAAGCAGATGGAAT
CTTAGAAACACTCATACTCCACAGTTTGACCTGCTATGAGGAGCTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCACCCCTCAGGAAAAATCAGTTGCCGGTGTCCAACAAGGTCGATGAGGAGCTGGCTGT
GCTTCAGATTGAGGATGTGGAGGATGAATTGGTAAAGGAAGAAGTCATCCTGTCTCCAGT
CCCATCAATGCTCAAGCTGCAAGTAGCGTCAAAGCCCATCGACCTCTCAGTGGCAAAGGA
CATAAAGACCCTTCTGTTTGGGTCCAGCCTTTGCTGTTTCAATGAAGAATGGAAACTTCA
GAGTTTTGCCTTTAATGACGCAGCCTCGTTAAAATATGGCATTGTGCAGAACAAGGGTGG
TCCCTGCGGGGTTCTGGCGGCTGTCCAAGGCTGTGTCCTACAGAAGCTCCTGTTTGAAGG
AGATAGTGGAGCCAGCTGCGCTCGGCAGCTGCAGCCTTCAAACGCTCACAGGACCCACTG
CTTGGCCCTGGCCATCGCAGACATTGTGTGGCGGGCCGGGGGCCACGAGAGAGCCATGGT
CACACTGGCTTCGGGAACACAGCAGTTCAGTCCAGCGGGGAAATACAAAGCAGATGGAAT
CTTAGAAACACTCATACTCCACAGTTTGACCTGCTATGAGGAGCTGGT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               71-179, gnl|bosTau2|chr4 (36212436-36212328)
               

               
               71-179, gnl|canFam2|chr14 (46475412-46475610)
               

               
               71-179, gnl|dasNov1|scaffold_3911 (129153-129331)
               

               
               71-179, gnl|hg17|chr7 (30649447-30649643)
               

               
               71-179, gnl|Hg17|chr7 (30649513-30649621)
               

               
               71-179, gnl|loxAfr1|scaffold_39789 (37314-37107)
               

               
               71-179, gnl|mm7|chr6 (55223849-55224038)
               

               
               71-179, gnl|Mm7|chr6 (55223904-55224012)
               

               
               71-179, gnl|oryCun1|scaffold_189227 (61980-62170)
               

               
               71-179, gnl|panTro1|chr6 (31752746-31752942)
               

               
               71-179, gnl|rheMac2|chr3 (95387463-95387267)
               

               
               71-179, gnl|rn3|chr4 (84313916-84314104)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-179, gnl|bosTau2|chr4 (36212436-36212328)
               

               
               71-179, gnl|canFam2|chr14 (46475412-46475610)
               

               
               71-179, gnl|dasNov1|scaffold_3911 (129153-129331)
               

               
               71-179, gnl|hg17|chr7 (30649447-30649643)
               

               
               71-179, gnl|Hg17|chr7 (30649513-30649621)
               

               
               71-179, gnl|loxAfr1|scaffold_39789 (37314-37107)
               

               
               71-179, gnl|mm7|chr6 (55223849-55224038)
               

               
               71-179, gnl|Mm7|chr6 (55223904-55224012)
               

               
               71-179, gnl|oryCun1|scaffold_189227 (61980-62170)
               

               
               71-179, gnl|panTro1|chr6 (31752746-31752942)
               

               
               71-179, gnl|rheMac2|chr3 (95387463-95387267)
               

               
               71-179, gnl|rn3|chr4 (84313916-84314104)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	71-179, gnl\|bosTau2\|chr4 (36212436-36212328)
	71-179, gnl\|canFam2\|chr14 (46475412-46475610)
	71-179, gnl\|dasNov1\|scaffold_3911 (129153-129331)
	71-179, gnl\|hg17\|chr7 (30649447-30649643)
	71-179, gnl\|Hg17\|chr7 (30649513-30649621)
	71-179, gnl\|loxAfr1\|scaffold_39789 (37314-37107)
	71-179, gnl\|mm7\|chr6 (55223849-55224038)
	71-179, gnl\|Mm7\|chr6 (55223904-55224012)
	71-179, gnl\|oryCun1\|scaffold_189227 (61980-62170)
	71-179, gnl\|panTro1\|chr6 (31752746-31752942)
	71-179, gnl\|rheMac2\|chr3 (95387463-95387267)
	71-179, gnl\|rn3\|chr4 (84313916-84314104)