Ss1.1-rnmm31c_p5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCAATGAGCAGCAGACGCTGGCCGAGAGGTTTGGTGACACGTCTTTACAAGAAGTTAT CAACGTGGAGAGTTTGGTGCGGTTAAATTCTTACTTCGAGCAGTTCAAGGAAGTTTTGCC TGAGGATTGCCTACCTCGATCTCGGAGCCAGACGTGCCTGCCAGAGCTGCTGCGTTTCCT GGGTCAGAACGTGCACGCCAGGAAGAACAAGAACGTCGACATCCTCTGGCAGGCTGCCGA GATCTGTCGCCGCCTTAATGGGGTCCGGTTCACCAGCTGCAAGAGCGCCAAGGACCGCAC GGCCATGTCGGTGACGCTGGAGCAGTGCCTGATACTGCAGCACGAGCACGGCATGGCCCC ACAGGTCTTCACCCAGGCCCTGGAGTGCATGCGCAGTGAGGGTTGTCGAAGAGAAAATAC AATGAAGAATGTTGGAAGTCGCAAATATGCATTTAATTCCCTGCAGCTGAAGGCTTTCCC CAAGCATTACAGGCCTCCTGAAGGGACTTACGGAAAAGTTGAAACATGAACACACGGTTT CCTCTCATTAGCTGTCACGTAATAAATGTGGGTACCCTCTAGTGTCATATATGAATTCTT CAAGAAGATCTGAAGGATTGGTTTTTATTTTTGTTTTTCTAACTATTTCACTCAAGAGTC TATGGAGCATGTTTTTGGTGTTGGAATCCATAGCAGGTAATGTCGGGCTTGATAGTGTGA ACAGTAACAACTGCCCATTTGACTAGCCTTCAGCCGTAACCACGTGGATTACCAGTAGTT ACCTATATAAATCAAACTAGGTACTTCTGAAATGCTAGAAGACTTTTTAAAATGCCCACT TAGGCAGCTGCTCACCTAACTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCAATGAGCAGCAGACGCTGGCCGAGAGGTTTGGTGACACGTCTTTACAAGAAGTTAT CAACGTGGAGAGTTTGGTGCGGTTAAATTCTTACTTCGAGCAGTTCAAGGAAGTTTTGCC TGAGGATTGCCTACCTCGATCTCGGAGCCAGACGTGCCTGCCAGAGCTGCTGCGTTTCCT GGGTCAGAACGTGCACGCCAGGAAGAACAAGAACGTCGACATCCTCTGGCAGGCTGCCGA GATCTGTCGCCGCCTTAATGGGGTCCGGTTCACCAGCTGCAAGAGCGCCAAGGACCGCAC GGCCATGTCGGTGACGCTGGAGCAGTGCCTGATACTGCAGCACGAGCACGGCATGGCCCC ACAGGTCTTCACCCAGGCCCTGGAGTGCATGCGCAGTGAGGGTTGTCGAAGAGAAAATAC AATGAAGAATGTTGGAAGTCGCAAATATGCATTTAATTCCCTGCAGCTGAAGGCTTTCCC CAAGCATTACAGGCCTCCTGAAGGGACTTACGGAAAAGTTGAAACATGAACACACGGTTT CCTCTCATTAGCTGTCACGTAATAAATGTGGGTACCCTCTAGTGTCATATATGAATTCTT CAAGAAGATCTGAAGGATTGGTTTTTATTTTTGTTTTTCTAACTATTTCACTCAAGAGTC TATGGAGCATGTTTTTGGTGTTGGAATCCATAGCAGGTAATGTCGGGCTTGATAGTGTGA ACAGTAACAACTGCCCATTTGACTAGCCTTCAGCCGTAACCACGTGGATTACCAGTAGTT ACCTATATAAATCAAACTAGGTACTTCTGAAATGCTAGAAGACTTTTTAAAATGCCCACT TAGGCAGCTGCTCACCTAACTTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 152-241, - strand, RNAz p=0.800037 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 152-241, - strand, RNAz p=0.800037 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 29-129, gnl|bosTau2|chr11 (4085917-4085817) | |
| 29-129, gnl|canFam2|chr10 (47227764-47227655) | |
| 29-129, gnl|danRer3|chr9 (8701250-8701355) | |
| 29-129, gnl|dasNov1|scaffold_3738 (31776-31883) | |
| 29-129, gnl|echTel1|scaffold_324467 (49782-49888) | |
| 29-129, gnl|fr1|chrUn (92380854-92380961) | |
| 29-129, gnl|galGal2|chr1 (125229651-125229542) | |
| 29-129, gnl|hg17|chr2 (98643551-98643660) | |
| 29-129, gnl|Hg17|chr2 (98643550-98643650) | |
| 29-129, gnl|loxAfr1|scaffold_14546 (49981-49872) | |
| 29-129, gnl|mm7|chr1 (37634323-37634432) | |
| 29-129, gnl|Mm7|chr1 (37634322-37634422) | |
| 29-129, gnl|monDom2|scaffold_11 (14193096-14192988) | |
| 29-129, gnl|oryCun1|scaffold_191291 (43577-43468) | |
| 29-129, gnl|panTro1|chr12 (101354276-101354385) | |
| 29-129, gnl|rheMac2|chr13 (98456049-98456158) | |
| 29-129, gnl|rn3|chr9 (36339614-36339723) | |
| 29-129, gnl|tetNig1|chr2 (8944778-8944673) | |
| 29-129, gnl|xenTro1|scaffold_798 (505814-505923) | |
| 131-241, gnl|bosTau2|chr11 (4085724-4085614) | |
| 131-241, gnl|canFam2|chr10 (47225750-47225600) | |
| 131-241, gnl|danRer3|chr9 (8701428-8701566) | |
| 131-241, gnl|dasNov1|scaffold_42973 (14857-14719) | |
| 131-241, gnl|echTel1|scaffold_324467 (52337-52484) | |
| 131-241, gnl|fr1|chrUn (92381011-92381143) | |
| 131-241, gnl|galGal2|chr1 (125226993-125226864) | |
| 131-241, gnl|hg17|chr2 (98647772-98647917) | |
| 131-241, gnl|Hg17|chr2 (98647798-98647908) | |
| 131-241, gnl|loxAfr1|scaffold_14546 (46229-46083) | |
| 131-241, gnl|mm7|chr1 (37637436-37637572) | |
| 131-241, gnl|Mm7|chr1 (37637453-37637563) | |
| 131-241, gnl|monDom2|scaffold_11 (14190323-14190190) | |
| 131-241, gnl|oryCun1|scaffold_191291 (39988-39844) | |
| 131-241, gnl|panTro1|chr12 (101358510-101358655) | |
| 131-241, gnl|rheMac2|chr13 (98460255-98460400) | |
| 131-241, gnl|rn3|chr9 (36343013-36343149) | |
| 131-241, gnl|tetNig1|chr2 (8944619-8944487) | |
| 131-241, gnl|xenTro1|scaffold_798 (506421-506568) | |
| 394-862, gnl|bosTau2|chr11 (4073277-4072809) | |
| 394-862, gnl|Hg17|chr2 (98662454-98662948) | |
| 394-862, gnl|Mm7|chr1 (37649505-37649967) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 29-129, gnl|bosTau2|chr11 (4085917-4085817) | |
| 29-129, gnl|canFam2|chr10 (47227764-47227655) | |
| 29-129, gnl|danRer3|chr9 (8701250-8701355) | |
| 29-129, gnl|dasNov1|scaffold_3738 (31776-31883) | |
| 29-129, gnl|echTel1|scaffold_324467 (49782-49888) | |
| 29-129, gnl|fr1|chrUn (92380854-92380961) | |
| 29-129, gnl|galGal2|chr1 (125229651-125229542) | |
| 29-129, gnl|hg17|chr2 (98643551-98643660) | |
| 29-129, gnl|Hg17|chr2 (98643550-98643650) | |
| 29-129, gnl|loxAfr1|scaffold_14546 (49981-49872) | |
| 29-129, gnl|mm7|chr1 (37634323-37634432) | |
| 29-129, gnl|Mm7|chr1 (37634322-37634422) | |
| 29-129, gnl|monDom2|scaffold_11 (14193096-14192988) | |
| 29-129, gnl|oryCun1|scaffold_191291 (43577-43468) | |
| 29-129, gnl|panTro1|chr12 (101354276-101354385) | |
| 29-129, gnl|rheMac2|chr13 (98456049-98456158) | |
| 29-129, gnl|rn3|chr9 (36339614-36339723) | |
| 29-129, gnl|tetNig1|chr2 (8944778-8944673) | |
| 29-129, gnl|xenTro1|scaffold_798 (505814-505923) | |
| 131-241, gnl|bosTau2|chr11 (4085724-4085614) | |
| 131-241, gnl|canFam2|chr10 (47225750-47225600) | |
| 131-241, gnl|danRer3|chr9 (8701428-8701566) | |
| 131-241, gnl|dasNov1|scaffold_42973 (14857-14719) | |
| 131-241, gnl|echTel1|scaffold_324467 (52337-52484) | |
| 131-241, gnl|fr1|chrUn (92381011-92381143) | |
| 131-241, gnl|galGal2|chr1 (125226993-125226864) | |
| 131-241, gnl|hg17|chr2 (98647772-98647917) | |
| 131-241, gnl|Hg17|chr2 (98647798-98647908) | |
| 131-241, gnl|loxAfr1|scaffold_14546 (46229-46083) | |
| 131-241, gnl|mm7|chr1 (37637436-37637572) | |
| 131-241, gnl|Mm7|chr1 (37637453-37637563) | |
| 131-241, gnl|monDom2|scaffold_11 (14190323-14190190) | |
| 131-241, gnl|oryCun1|scaffold_191291 (39988-39844) | |
| 131-241, gnl|panTro1|chr12 (101358510-101358655) | |
| 131-241, gnl|rheMac2|chr13 (98460255-98460400) | |
| 131-241, gnl|rn3|chr9 (36343013-36343149) | |
| 131-241, gnl|tetNig1|chr2 (8944619-8944487) | |
| 131-241, gnl|xenTro1|scaffold_798 (506421-506568) | |
| 394-862, gnl|bosTau2|chr11 (4073277-4072809) | |
| 394-862, gnl|Hg17|chr2 (98662454-98662948) | |
| 394-862, gnl|Mm7|chr1 (37649505-37649967) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) | |
| ebs (0.118301) |