Non-Coding RNA Search

Ss1.1-rnmm33c_b18.5

Sequence:


               
               TATGCTAGGAATTGTGCTCCCAGCAGCTCTGTCCTCTTGGTCAAGGGATTCTCCATCCAG
ACCTGAGCCAAGAGTTTAGGCTGGAAGGTCAAGAGTATAAACTGCGAGGCTGGACCTCAT
CTAACTTAAAGAATGGTTTGGAATGAGGGGTCAAGCCTGTTCATGTCAGTGGCCCCTGAC
CTGAGCACCAGAGTTGGGGGGCAGGATTAGGCAAGGTCTTGGAAGTCCAAGCTCTGCTCT
GGGGACGCTTGGGGTCCAGGATCCTAAATCAACGCTATGGGATTTGAGATGTCATGAATA
TCTATTGTTACCATGCGCCTGATAGAGGAATTATGAAATACTGTCATTTCTCCTGGATAT
ATTTCACCCATCTTCTCCTCCCCCACCACTTATGAGTTTTCTCTGCCTCCAGAACCAGCC
CCAGGGTATAAGCTGGAGGCCTGGTGTCTCAACTTCAGCTGAGTGGTTCATGAGAACAGA
AGAGCCAGTGTGCCTTCCCTCATTCCCTCTGTTCCTTCTGGGTGTCTTAGTGTCTCAGGG
GACTTTTTGGCTGCAAGTAACTGATATCCTAAGTCGAAGTGGCTTAAAAAAGAAGAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGCTAGGAATTGTGCTCCCAGCAGCTCTGTCCTCTTGGTCAAGGGATTCTCCATCCAG
ACCTGAGCCAAGAGTTTAGGCTGGAAGGTCAAGAGTATAAACTGCGAGGCTGGACCTCAT
CTAACTTAAAGAATGGTTTGGAATGAGGGGTCAAGCCTGTTCATGTCAGTGGCCCCTGAC
CTGAGCACCAGAGTTGGGGGGCAGGATTAGGCAAGGTCTTGGAAGTCCAAGCTCTGCTCT
GGGGACGCTTGGGGTCCAGGATCCTAAATCAACGCTATGGGATTTGAGATGTCATGAATA
TCTATTGTTACCATGCGCCTGATAGAGGAATTATGAAATACTGTCATTTCTCCTGGATAT
ATTTCACCCATCTTCTCCTCCCCCACCACTTATGAGTTTTCTCTGCCTCCAGAACCAGCC
CCAGGGTATAAGCTGGAGGCCTGGTGTCTCAACTTCAGCTGAGTGGTTCATGAGAACAGA
AGAGCCAGTGTGCCTTCCCTCATTCCCTCTGTTCCTTCTGGGTGTCTTAGTGTCTCAGGG
GACTTTTTGGCTGCAAGTAACTGATATCCTAAGTCGAAGTGGCTTAAAAAAGAAGAAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-263, + strand, RNAz p=0.998595

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-263, + strand, RNAz p=0.998595

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_021158, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_021158, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-595, gnl|bosTau2|chr13 (41885964-41886523)
               

               
               4-595, gnl|Hg17|chr20 (325851-326454)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-595, gnl|bosTau2|chr13 (41885964-41886523)
               

               
               4-595, gnl|Hg17|chr20 (325851-326454)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cje (0.165235)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)

	4-595, gnl\|bosTau2\|chr13 (41885964-41886523)
	4-595, gnl\|Hg17\|chr20 (325851-326454)