Ss1.1-rnmm34c_g18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGACCAGAAGTTAAAAGATTATGAGGACCTCAGAGAGGACATGAGAGGGAAGGAATTTG AAGTAAAGAACCTTCTGGAGAAAGGAAAGACGGAACAGCAGACTGCTGACCAACTCCTAG CCAGAGCTGATGCTGCCAAGGCTCTTGCGGAAGAAGCTGCTAAAAAGGGACGAAATACTT TACAAGAAGCCAATGACATTCTCAACAACCTGAAAGATTTTGATAGACGAGTAAATGATA ACAAGACGGCTGCAGAGGAGGCCCTAAGGAGAATCCCTGCCATCAACCAGACCATAATCG AAGCCAATGAAAAGACCAGGGAAGCACAGCTGGCTCTGGGCAACGCTGCCGCAGATGCCA CTGAGGCCAAGAACAAGGCCCACGAGGCAGAAAGGATTGCCAGCGCTGTCCAAAAGAATG CTACCAGCACCAAGGCAGAAGCTGAAAGGACTTTTGCAGAAGTTACAGATCTGGATAATG AGGTGAATAATATGTTGAAACAACTACAGGAGGCAGAAAAGGAGCTAAAGAAAAAACAAG ATGATGCTGACCAGGACATGATGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGACCAGAAGTTAAAAGATTATGAGGACCTCAGAGAGGACATGAGAGGGAAGGAATTTG AAGTAAAGAACCTTCTGGAGAAAGGAAAGACGGAACAGCAGACTGCTGACCAACTCCTAG CCAGAGCTGATGCTGCCAAGGCTCTTGCGGAAGAAGCTGCTAAAAAGGGACGAAATACTT TACAAGAAGCCAATGACATTCTCAACAACCTGAAAGATTTTGATAGACGAGTAAATGATA ACAAGACGGCTGCAGAGGAGGCCCTAAGGAGAATCCCTGCCATCAACCAGACCATAATCG AAGCCAATGAAAAGACCAGGGAAGCACAGCTGGCTCTGGGCAACGCTGCCGCAGATGCCA CTGAGGCCAAGAACAAGGCCCACGAGGCAGAAAGGATTGCCAGCGCTGTCCAAAAGAATG CTACCAGCACCAAGGCAGAAGCTGAAAGGACTTTTGCAGAAGTTACAGATCTGGATAATG AGGTGAATAATATGTTGAAACAACTACAGGAGGCAGAAAAGGAGCTAAAGAAAAAACAAG ATGATGCTGACCAGGACATGATGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-101, + strand, RNAz p=0.785799 | |
| 294-413, - strand, RNAz p=0.994049 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-101, + strand, RNAz p=0.785799 | |
| 294-413, - strand, RNAz p=0.994049 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC015586, + |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-101, gnl|bosTau2|chr16 (45016064-45016164) | |
| 1-101, gnl|canFam2|chr7 (19477702-19477884) | |
| 1-101, gnl|danRer3|chr2 (28826638-28826806) | |
| 1-101, gnl|dasNov1|scaffold_3921 (47688-47506) | |
| 1-101, gnl|echTel1|scaffold_311727 (42361-42543) | |
| 1-101, gnl|fr1|chrUn (278897143-278896983) | |
| 1-101, gnl|galGal2|chr8 (7520695-7520889) | |
| 1-101, gnl|hg17|chr1 (179835434-179835616) | |
| 1-101, gnl|Hg17|chr1 (179835501-179835601) | |
| 1-101, gnl|mm7|chr1 (153190281-153190099) | |
| 1-101, gnl|Mm7|chr1 (153190212-153190112) | |
| 1-101, gnl|monDom2|scaffold_16 (36992569-36992744) | |
| 1-101, gnl|panTro1|chr1 (162452980-162453162) | |
| 1-101, gnl|rheMac2|chr1 (187527641-187527459) | |
| 1-101, gnl|rn3|chr13 (68266938-68266756) | |
| 1-101, gnl|tetNig1|chr15_random (61420-61253) | |
| 1-101, gnl|xenTro1|scaffold_126 (553708-553887) | |
| 215-416, gnl|bosTau2|chr16 (45017513-45017714) | |
| 215-416, gnl|canFam2|chr7 (19479256-19479479) | |
| 215-416, gnl|danRer3|chr2 (28829075-28829282) | |
| 215-416, gnl|dasNov1|scaffold_3921 (43400-43182) | |
| 215-416, gnl|echTel1|scaffold_311727 (44817-45035) | |
| 215-416, gnl|fr1|chrUn (278896641-278896420) | |
| 215-416, gnl|galGal2|chr8 (7521905-7522123) | |
| 215-416, gnl|hg17|chr1 (179837163-179837381) | |
| 215-416, gnl|Hg17|chr1 (179837176-179837377) | |
| 215-416, gnl|mm7|chr1 (153188797-153188579) | |
| 215-416, gnl|Mm7|chr1 (153188782-153188581) | |
| 215-416, gnl|monDom2|scaffold_16 (36993766-36993973) | |
| 215-416, gnl|oryCun1|scaffold_135878 (13567-13772) | |
| 215-416, gnl|panTro1|chr1 (162454711-162454929) | |
| 215-416, gnl|rheMac2|chr1 (187525594-187525376) | |
| 215-416, gnl|rn3|chr13 (68265488-68265270) | |
| 215-416, gnl|tetNig1|chr15_random (60952-60746) | |
| 215-416, gnl|xenTro1|scaffold_126 (559345-559549) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-101, gnl|bosTau2|chr16 (45016064-45016164) | |
| 1-101, gnl|canFam2|chr7 (19477702-19477884) | |
| 1-101, gnl|danRer3|chr2 (28826638-28826806) | |
| 1-101, gnl|dasNov1|scaffold_3921 (47688-47506) | |
| 1-101, gnl|echTel1|scaffold_311727 (42361-42543) | |
| 1-101, gnl|fr1|chrUn (278897143-278896983) | |
| 1-101, gnl|galGal2|chr8 (7520695-7520889) | |
| 1-101, gnl|hg17|chr1 (179835434-179835616) | |
| 1-101, gnl|Hg17|chr1 (179835501-179835601) | |
| 1-101, gnl|mm7|chr1 (153190281-153190099) | |
| 1-101, gnl|Mm7|chr1 (153190212-153190112) | |
| 1-101, gnl|monDom2|scaffold_16 (36992569-36992744) | |
| 1-101, gnl|panTro1|chr1 (162452980-162453162) | |
| 1-101, gnl|rheMac2|chr1 (187527641-187527459) | |
| 1-101, gnl|rn3|chr13 (68266938-68266756) | |
| 1-101, gnl|tetNig1|chr15_random (61420-61253) | |
| 1-101, gnl|xenTro1|scaffold_126 (553708-553887) | |
| 215-416, gnl|bosTau2|chr16 (45017513-45017714) | |
| 215-416, gnl|canFam2|chr7 (19479256-19479479) | |
| 215-416, gnl|danRer3|chr2 (28829075-28829282) | |
| 215-416, gnl|dasNov1|scaffold_3921 (43400-43182) | |
| 215-416, gnl|echTel1|scaffold_311727 (44817-45035) | |
| 215-416, gnl|fr1|chrUn (278896641-278896420) | |
| 215-416, gnl|galGal2|chr8 (7521905-7522123) | |
| 215-416, gnl|hg17|chr1 (179837163-179837381) | |
| 215-416, gnl|Hg17|chr1 (179837176-179837377) | |
| 215-416, gnl|mm7|chr1 (153188797-153188579) | |
| 215-416, gnl|Mm7|chr1 (153188782-153188581) | |
| 215-416, gnl|monDom2|scaffold_16 (36993766-36993973) | |
| 215-416, gnl|oryCun1|scaffold_135878 (13567-13772) | |
| 215-416, gnl|panTro1|chr1 (162454711-162454929) | |
| 215-416, gnl|rheMac2|chr1 (187525594-187525376) | |
| 215-416, gnl|rn3|chr13 (68265488-68265270) | |
| 215-416, gnl|tetNig1|chr15_random (60952-60746) | |
| 215-416, gnl|xenTro1|scaffold_126 (559345-559549) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) | |
| nmm (0.132802) | |
| clu (0.119646) |