Non-Coding RNA Search

Ss1.1-rnmm34c_k13.5

Sequence:


               
               GAATCGTGGGAAACCAAAATGAGACATAATCAGCTGTGTTGCGAGACACCACCTACTGTC
ACTGTACATGTAAAATCAGGGTCAAATAGATCACATCAGCCCAAAAAACCCATTAATCTG
AAGCGTCCTATTTTTAAAGATAGTTGGCCAGCATCTGAAAAAAATGCACATAATAGCAAC
AAGTCTAAACGCCCCAAAGGACCCTGTCTAGTTATACAGCGTCAGGAAATGACTGCTTTC
TTTAAATTATTTGATGATGATTTAATTCAAGATTTCTTGTGGATGGACTGCTGCTGTAAA
AATTGCAGACAAGTATCTTTTAGCTATGACCTTTGTTTATTTCAAGAGAGCCAAATTTAC
TATAAACGAGCATACCAGGATAAATTTCTTTATTGCTCTGTATCTGGCTAATACAGTTGA
AGAAGATGAAGAAGAATCCAAATATGAAATTTTTCCATGGGCTTTAGGGAAAAACTGGAG
AAAATTATTCCCTGATTTCTTAAAGTTAAGGGACCAACTCTGGGATAGAATTGACTATAG
AGCTATTGTAAGCAGGCGATGCTGTGAGGAGGTTATGGCCATTGCTCCAACGCATTATAT
ATGGCAACGAGAACGCTCTGTGCATCACAGTGGAGCTGTTAGAAACTACAACAGAGATGA
AGTTCAATTGCCCCGGGGACCTAGTGCCACGCCAGTAGATTGTTCACTCTGTGGTAAAAA
AGGAAGATATGTTAGACTGGGATTGTCTTCATCATCTTCATCCAGCGATACAGTAGAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATCGTGGGAAACCAAAATGAGACATAATCAGCTGTGTTGCGAGACACCACCTACTGTC
ACTGTACATGTAAAATCAGGGTCAAATAGATCACATCAGCCCAAAAAACCCATTAATCTG
AAGCGTCCTATTTTTAAAGATAGTTGGCCAGCATCTGAAAAAAATGCACATAATAGCAAC
AAGTCTAAACGCCCCAAAGGACCCTGTCTAGTTATACAGCGTCAGGAAATGACTGCTTTC
TTTAAATTATTTGATGATGATTTAATTCAAGATTTCTTGTGGATGGACTGCTGCTGTAAA
AATTGCAGACAAGTATCTTTTAGCTATGACCTTTGTTTATTTCAAGAGAGCCAAATTTAC
TATAAACGAGCATACCAGGATAAATTTCTTTATTGCTCTGTATCTGGCTAATACAGTTGA
AGAAGATGAAGAAGAATCCAAATATGAAATTTTTCCATGGGCTTTAGGGAAAAACTGGAG
AAAATTATTCCCTGATTTCTTAAAGTTAAGGGACCAACTCTGGGATAGAATTGACTATAG
AGCTATTGTAAGCAGGCGATGCTGTGAGGAGGTTATGGCCATTGCTCCAACGCATTATAT
ATGGCAACGAGAACGCTCTGTGCATCACAGTGGAGCTGTTAGAAACTACAACAGAGATGA
AGTTCAATTGCCCCGGGGACCTAGTGCCACGCCAGTAGATTGTTCACTCTGTGGTAAAAA
AGGAAGATATGTTAGACTGGGATTGTCTTCATCATCTTCATCCAGCGATACAGTAGAGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55595353|ref|XP_515374.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55595353|ref|XP_515374.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               134-253, - strand, RNAz p=0.547784
               

               
               387-505, + strand, RNAz p=0.631748

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               134-253, - strand, RNAz p=0.547784
               

               
               387-505, + strand, RNAz p=0.631748

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-253, gnl|bosTau2|chr11 (51210619-51210871)
               

               
               1-253, gnl|Hg17|chr2 (28950514-28950766)
               

               
               1-253, gnl|Mm7|chr17 (69837619-69837868)
               


               
               387-573, gnl|bosTau2|chr11 (51221845-51222031)
               

               
               387-573, gnl|Hg17|chr2 (28963652-28963838)
               

               
               387-573, gnl|Mm7|chr17 (69850383-69850569)
               


               
               586-780, gnl|bosTau2|chr11 (51269722-51269525)
               

               
               586-780, gnl|Hg17|chr2 (28974704-28974900)
               

               
               586-780, gnl|Mm7|chr17 (69859496-69859692)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-253, gnl|bosTau2|chr11 (51210619-51210871)
               

               
               1-253, gnl|Hg17|chr2 (28950514-28950766)
               

               
               1-253, gnl|Mm7|chr17 (69837619-69837868)
               


               
               387-573, gnl|bosTau2|chr11 (51221845-51222031)
               

               
               387-573, gnl|Hg17|chr2 (28963652-28963838)
               

               
               387-573, gnl|Mm7|chr17 (69850383-69850569)
               


               
               586-780, gnl|bosTau2|chr11 (51269722-51269525)
               

               
               586-780, gnl|Hg17|chr2 (28974704-28974900)
               

               
               586-780, gnl|Mm7|chr17 (69859496-69859692)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cte (1.17096)
               

               
               tes (0.207814)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (1.17096)
               

               
               tes (0.207814)
               

               
               nmm (0.132802)

	134-253, - strand, RNAz p=0.547784
	387-505, + strand, RNAz p=0.631748

	1-253, gnl\|bosTau2\|chr11 (51210619-51210871)
	1-253, gnl\|Hg17\|chr2 (28950514-28950766)
	1-253, gnl\|Mm7\|chr17 (69837619-69837868)

	387-573, gnl\|bosTau2\|chr11 (51221845-51222031)
	387-573, gnl\|Hg17\|chr2 (28963652-28963838)
	387-573, gnl\|Mm7\|chr17 (69850383-69850569)

	586-780, gnl\|bosTau2\|chr11 (51269722-51269525)
	586-780, gnl\|Hg17\|chr2 (28974704-28974900)
	586-780, gnl\|Mm7\|chr17 (69859496-69859692)