Non-Coding RNA Search

Ss1.1-rnmm34c_k6.5

Sequence:


               
               AGTTTTTATGATTGCACATCATGATCTGGGCCGTCTTGATCTGAAGGTCATCTGGGCCCC
GCAATCCCAGGTCCCTGTTTAGCCAGGGCCACCGCTTTGTTTTTTTTGCCAGAGTTCATG
CAGGTGGACTGCAGAGCCCCAAAGCCCTTCTCGGTCTCTTCGAGGGCCGAGGTTGTGAGG
GGTTCCAAGTCGCAGGTAGACATTCCAATTTTATTTAGAAACCATTCTCAGGCAGAGCTG
CGGGATCGGGCTCTGTGAAGCATCTGCCGTGTAGAGCCAGGCCTGGAGGTCCTGGCTCTC
AGGCAGCAGGGCTATGCATCGACTTAAGGGTGACGTGCCGACGAGCTTGGAGAACGCGTC
ATAGACGGACTGGGACACTTACCCCGAAGCTCCAGTCATCACGCTGTTCCCACTCACCCA
GTGGCTGCTTCACAAGGATTTTAGGGCACTCGCCTGTCCTGTGAAGTCTGGACTGCTCCA
GCTCAGTGATTGCAGATGTGTTGAGAGTCAGCTGCTTCCTCAGAATGTACGTCTGTGTGG
AGACACAGGCAGTTCTTTGGGTTCCTGACTCCCAGGGGACAGTGCTCAGTAGCTCACGGT
TCACATGGAGGTTGCCCGGTTTCCAGGGGAGCAAGACCTCTGCCAGCCTAGTCAGCCCGG
CCTTTGCTTGAGCTTCTTTTTTTACATAAAAACCAACTCGTGTTTCACACTGGGCTTAAG
CGGATTCCTTATTTCCTGATTATATATATTTTTTGCAGCTTGGGTTTCCAGTTTGTTTAC
AGAGTAGTCTTAGGTAGTAGCGAAAGAGCCAAAGAAGAGATTTGTATTGCTGAGCTCAGA
GCCGCGCAGAGGCCGTCCGTGAACACTGAGCAGTGGGAACTCGGTGGGCGCCTGTGCCCA
GGAACACCCAGGTTCCCTTCCCTGCGTTGTGCCCGCCTCCCCATAGACCACTGAGGGTGC
AGCTGGAGCAGGACACCCCTCATTCCTAGGAATCTAGTGATGCCTCTTGCCTCAGGGAAA
TGTTTCTTTGATGGGGGTTTATGAGGTTTCTTTTCCTTGTTGATGCTTTATTTGTGGTAA
CGAAAGAGTGCGTGACTTCAGGAGCCAGCAGGGCAGGTCTGCGGGCAGCACGGGCTCACC
CGGCCCCGGCACTGCAGGGCTTTCCTTGCCAGCGTTTCTTGGGTGTGAAAGGGCTGTGGC
TTTTTTGCAGCGACTGTGTTGGTGTTGGGGGGTGGGGTGTGGAAATTGTTAATCTTGTAT
AAAGCAACTCAATAAATTGTTTCAAGATTTCCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTTTTATGATTGCACATCATGATCTGGGCCGTCTTGATCTGAAGGTCATCTGGGCCCC
GCAATCCCAGGTCCCTGTTTAGCCAGGGCCACCGCTTTGTTTTTTTTGCCAGAGTTCATG
CAGGTGGACTGCAGAGCCCCAAAGCCCTTCTCGGTCTCTTCGAGGGCCGAGGTTGTGAGG
GGTTCCAAGTCGCAGGTAGACATTCCAATTTTATTTAGAAACCATTCTCAGGCAGAGCTG
CGGGATCGGGCTCTGTGAAGCATCTGCCGTGTAGAGCCAGGCCTGGAGGTCCTGGCTCTC
AGGCAGCAGGGCTATGCATCGACTTAAGGGTGACGTGCCGACGAGCTTGGAGAACGCGTC
ATAGACGGACTGGGACACTTACCCCGAAGCTCCAGTCATCACGCTGTTCCCACTCACCCA
GTGGCTGCTTCACAAGGATTTTAGGGCACTCGCCTGTCCTGTGAAGTCTGGACTGCTCCA
GCTCAGTGATTGCAGATGTGTTGAGAGTCAGCTGCTTCCTCAGAATGTACGTCTGTGTGG
AGACACAGGCAGTTCTTTGGGTTCCTGACTCCCAGGGGACAGTGCTCAGTAGCTCACGGT
TCACATGGAGGTTGCCCGGTTTCCAGGGGAGCAAGACCTCTGCCAGCCTAGTCAGCCCGG
CCTTTGCTTGAGCTTCTTTTTTTACATAAAAACCAACTCGTGTTTCACACTGGGCTTAAG
CGGATTCCTTATTTCCTGATTATATATATTTTTTGCAGCTTGGGTTTCCAGTTTGTTTAC
AGAGTAGTCTTAGGTAGTAGCGAAAGAGCCAAAGAAGAGATTTGTATTGCTGAGCTCAGA
GCCGCGCAGAGGCCGTCCGTGAACACTGAGCAGTGGGAACTCGGTGGGCGCCTGTGCCCA
GGAACACCCAGGTTCCCTTCCCTGCGTTGTGCCCGCCTCCCCATAGACCACTGAGGGTGC
AGCTGGAGCAGGACACCCCTCATTCCTAGGAATCTAGTGATGCCTCTTGCCTCAGGGAAA
TGTTTCTTTGATGGGGGTTTATGAGGTTTCTTTTCCTTGTTGATGCTTTATTTGTGGTAA
CGAAAGAGTGCGTGACTTCAGGAGCCAGCAGGGCAGGTCTGCGGGCAGCACGGGCTCACC
CGGCCCCGGCACTGCAGGGCTTTCCTTGCCAGCGTTTCTTGGGTGTGAAAGGGCTGTGGC
TTTTTTGCAGCGACTGTGTTGGTGTTGGGGGGTGGGGTGTGGAAATTGTTAATCTTGTAT
AAAGCAACTCAATAAATTGTTTCAAGATTTCCAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               39-156, - strand, RNAz p=0.975663
               

               
               212-324, + strand, RNAz p=0.920996
               

               
               879-985, - strand, RNAz p=0.990016

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-156, - strand, RNAz p=0.975663
               

               
               212-324, + strand, RNAz p=0.920996
               

               
               879-985, - strand, RNAz p=0.990016

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_016936, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_016936, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-324, gnl|bosTau2|chr25 (4769586-4769906)
               

               
               1-324, gnl|Hg17|chr16 (4870994-4871317)
               

               
               1-324, gnl|Mm7|chr16 (4758310-4758626)
               


               
               409-1296, gnl|bosTau2|chr25 (4769928-4770787)
               

               
               409-1296, gnl|Hg17|chr16 (4871384-4872362)
               

               
               409-1296, gnl|Mm7|chr16 (4758706-4759650)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-324, gnl|bosTau2|chr25 (4769586-4769906)
               

               
               1-324, gnl|Hg17|chr16 (4870994-4871317)
               

               
               1-324, gnl|Mm7|chr16 (4758310-4758626)
               


               
               409-1296, gnl|bosTau2|chr25 (4769928-4770787)
               

               
               409-1296, gnl|Hg17|chr16 (4871384-4872362)
               

               
               409-1296, gnl|Mm7|chr16 (4758706-4759650)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               eye (0.341006)
               

               
               cut (0.339847)
               

               
               nca (0.273748)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               cut (0.339847)
               

               
               nca (0.273748)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	39-156, - strand, RNAz p=0.975663
	212-324, + strand, RNAz p=0.920996
	879-985, - strand, RNAz p=0.990016

	1-324, gnl\|bosTau2\|chr25 (4769586-4769906)
	1-324, gnl\|Hg17\|chr16 (4870994-4871317)
	1-324, gnl\|Mm7\|chr16 (4758310-4758626)

	409-1296, gnl\|bosTau2\|chr25 (4769928-4770787)
	409-1296, gnl\|Hg17\|chr16 (4871384-4872362)
	409-1296, gnl\|Mm7\|chr16 (4758706-4759650)

	eye (0.341006)
	cut (0.339847)
	nca (0.273748)
	sto (0.179824)
	fty (0.17584)
	cje (0.165235)
	cli (0.152812)
	nmm (0.132802)
	cly (0.120642)
	pgl (0.118483)
	jej (0.0989218)