Non-Coding RNA Search

Ss1.1-rnmm34c_l13.5

Sequence:


               
               TCCAGCGCTCCGGGCACTCAGCTGCTCCGCCCGCGGGCAGTCTCCGCTCCACTTCCGGGA
AGGCCTTGGACAGGAGCGGAAGTATATCCGGGGCGGGGCAGTGGTGCGCGGAGTTTTTCC
GCGGCGGACGGCGAGGCAAGGCTGATTGGAGCCCCGGGGGCGGAGTCTGGCGACGAGAGT
GGCCAGATCCTTCGGACAGCAGGCGGCAGGAAGAAGCAGGGGAGCCCTTAGTGCTGAATT
CCGAGAAGCCTGTCCTGGTTTTCCCCACGCGGTCCTTAGAGGTGTTCTAAGAAGGGCAGA
GAAAAAGGTCTGGGGAAAACCCGGGGCCCAGTGACCGCCCTGTCTCGAGTATCCTGCCCG
CCCTGCCCTGTGGAGGCCCCGCCAAGATGTCCAACCCCTTCCTGCTGAAACAGGTCTTCA
ACAAGGACAAGACCTTCCGGCCCAAGCGCAAGTTTGAGCCGGGCACCCAGCGCTTTGAGC
TGCACAAGAAGGCACAGGCATCGCTGAACGCAGGGCTAGACCTGAAGCTGGCCGTGCAGC
TGCCTGCTGGCGAGGAGCTCAACGACTGGGTGGCCGTGCACGTGGTGGACTTCTTCAACC
GCATCAACCTCATCTACGGCACCATCAGTGACGGCTGCACCGAGCGCTCCTGCCCCATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGCGCTCCGGGCACTCAGCTGCTCCGCCCGCGGGCAGTCTCCGCTCCACTTCCGGGA
AGGCCTTGGACAGGAGCGGAAGTATATCCGGGGCGGGGCAGTGGTGCGCGGAGTTTTTCC
GCGGCGGACGGCGAGGCAAGGCTGATTGGAGCCCCGGGGGCGGAGTCTGGCGACGAGAGT
GGCCAGATCCTTCGGACAGCAGGCGGCAGGAAGAAGCAGGGGAGCCCTTAGTGCTGAATT
CCGAGAAGCCTGTCCTGGTTTTCCCCACGCGGTCCTTAGAGGTGTTCTAAGAAGGGCAGA
GAAAAAGGTCTGGGGAAAACCCGGGGCCCAGTGACCGCCCTGTCTCGAGTATCCTGCCCG
CCCTGCCCTGTGGAGGCCCCGCCAAGATGTCCAACCCCTTCCTGCTGAAACAGGTCTTCA
ACAAGGACAAGACCTTCCGGCCCAAGCGCAAGTTTGAGCCGGGCACCCAGCGCTTTGAGC
TGCACAAGAAGGCACAGGCATCGCTGAACGCAGGGCTAGACCTGAAGCTGGCCGTGCAGC
TGCCTGCTGGCGAGGAGCTCAACGACTGGGTGGCCGTGCACGTGGTGGACTTCTTCAACC
GCATCAACCTCATCTACGGCACCATCAGTGACGGCTGCACCGAGCGCTCCTGCCCCATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61876350|ref|XP_597380.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61876350|ref|XP_597380.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               7-534, - strand, RNAz p=0.997889

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-534, - strand, RNAz p=0.997889

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               7-231, gnl|bosTau2|chr7 (18231394-18231622)
               

               
               7-231, gnl|echTel1|scaffold_186180 (6106-5649)
               

               
               7-231, gnl|fr1|chrUn (191591090-191591624)
               

               
               7-231, gnl|hg17|chr19 (2047236-2047716)
               

               
               7-231, gnl|Hg17|chr19 (2047594-2047285)
               

               
               7-231, gnl|mm7|chr10 (80491421-80491923)
               

               
               7-231, gnl|panTro1|chr20 (2157872-2158333)
               

               
               7-231, gnl|rheMac2|chr19 (1882478-1882950)
               

               
               7-231, gnl|rn3|chr7 (10521170-10520659)
               


               
               376-660, gnl|bosTau2|chr7 (18242284-18242565)
               

               
               376-660, gnl|Hg17|chr19 (2029565-2029289)
               

               
               376-660, gnl|Mm7|chr10 (80481147-80480872)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-231, gnl|bosTau2|chr7 (18231394-18231622)
               

               
               7-231, gnl|echTel1|scaffold_186180 (6106-5649)
               

               
               7-231, gnl|fr1|chrUn (191591090-191591624)
               

               
               7-231, gnl|hg17|chr19 (2047236-2047716)
               

               
               7-231, gnl|Hg17|chr19 (2047594-2047285)
               

               
               7-231, gnl|mm7|chr10 (80491421-80491923)
               

               
               7-231, gnl|panTro1|chr20 (2157872-2158333)
               

               
               7-231, gnl|rheMac2|chr19 (1882478-1882950)
               

               
               7-231, gnl|rn3|chr7 (10521170-10520659)
               


               
               376-660, gnl|bosTau2|chr7 (18242284-18242565)
               

               
               376-660, gnl|Hg17|chr19 (2029565-2029289)
               

               
               376-660, gnl|Mm7|chr10 (80481147-80480872)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	7-231, gnl\|bosTau2\|chr7 (18231394-18231622)
	7-231, gnl\|echTel1\|scaffold_186180 (6106-5649)
	7-231, gnl\|fr1\|chrUn (191591090-191591624)
	7-231, gnl\|hg17\|chr19 (2047236-2047716)
	7-231, gnl\|Hg17\|chr19 (2047594-2047285)
	7-231, gnl\|mm7\|chr10 (80491421-80491923)
	7-231, gnl\|panTro1\|chr20 (2157872-2158333)
	7-231, gnl\|rheMac2\|chr19 (1882478-1882950)
	7-231, gnl\|rn3\|chr7 (10521170-10520659)

	376-660, gnl\|bosTau2\|chr7 (18242284-18242565)
	376-660, gnl\|Hg17\|chr19 (2029565-2029289)
	376-660, gnl\|Mm7\|chr10 (80481147-80480872)