Non-Coding RNA Search

Ss1.1-rnmm34c_n14.5

Sequence:


               
               TTAGTGTTGAATGTTACCAGGTTGATCCTTCTTGATTTCAGAGAGATCCCATTCCAACAA
ATACTTTTTAAAGCGATAGAATTGAGGTAAAACTCTGTTATGGGAGCACAGGTGGCTATA
TTTTCTTAATTCTGGAAGTAGATAACCATGTGCACTTAAAATTATATTCTGTAAACATGC
CTAGTGCCATTACAGGATTCCCAGCTCTTACTAAATTGTATTAGCAGGAGCTGGTACTTT
ATTTACTTTATTTACCTGTAACTCTTAATTTGAACTATACTTGAAGGACAGTGGTGATGT
CAGGTACTTACATTGGCTGGGAGATAAGCAGTATTGTTAATAAAAGCTGCATATACAATA
TCTAGTAACTGCCCTATTTTGTAACAAAAGTACTTAAATTCAGTATCGCATTATGTGTCC
TATTCACGTAACCCCCATTCTCCAGATTTTTAAAATATTTTTATTGGATCAGTTTATTTT
CTTTCTAAAGTAGCTGTAGATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGTGTTGAATGTTACCAGGTTGATCCTTCTTGATTTCAGAGAGATCCCATTCCAACAA
ATACTTTTTAAAGCGATAGAATTGAGGTAAAACTCTGTTATGGGAGCACAGGTGGCTATA
TTTTCTTAATTCTGGAAGTAGATAACCATGTGCACTTAAAATTATATTCTGTAAACATGC
CTAGTGCCATTACAGGATTCCCAGCTCTTACTAAATTGTATTAGCAGGAGCTGGTACTTT
ATTTACTTTATTTACCTGTAACTCTTAATTTGAACTATACTTGAAGGACAGTGGTGATGT
CAGGTACTTACATTGGCTGGGAGATAAGCAGTATTGTTAATAAAAGCTGCATATACAATA
TCTAGTAACTGCCCTATTTTGTAACAAAAGTACTTAAATTCAGTATCGCATTATGTGTCC
TATTCACGTAACCCCCATTCTCCAGATTTTTAAAATATTTTTATTGGATCAGTTTATTTT
CTTTCTAAAGTAGCTGTAGATTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               126-281, + strand, RNAz p=0.859346

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-281, + strand, RNAz p=0.859346

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006948, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006948, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-504, gnl|bosTau2|chr1 (14756424-14756927)
               

               
               7-504, gnl|Hg17|chr21 (14667649-14667164)
               

               
               7-504, gnl|Mm7|chr16 (75754927-75754497)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-504, gnl|bosTau2|chr1 (14756424-14756927)
               

               
               7-504, gnl|Hg17|chr21 (14667649-14667164)
               

               
               7-504, gnl|Mm7|chr16 (75754927-75754497)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               liv (0.146284)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)

	7-504, gnl\|bosTau2\|chr1 (14756424-14756927)
	7-504, gnl\|Hg17\|chr21 (14667649-14667164)
	7-504, gnl\|Mm7\|chr16 (75754927-75754497)

	liv (0.146284)
	ste (0.135208)
	nmm (0.132802)
	kid (0.129735)
	pgl (0.118483)