Ss1.1-rnmm34c_n15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGTCCTGGAACGTGCACCATACCAACTCTGGCTACTCCCGGGAGAAGCCTATCACGGT GGCCCCCACCAAGGAGGTCAGGAAGGTCCATTTTGACACCCAGGACTATGGGCCCCAGGC CATCACTGGGCTAGAGCCCAAGGATGTGCCCCTGCTCCACCAGCAGCAGAACAAGGGCTC GCTGGAGTGGGAAAACTTCCGGCACGGCCCCCGCTTCATGACTTCCGAGTATAATTCCAA GTATCTCAAGGAGCCTTCAAACCAGCCAGATCTCTTGCAGAAGAAATCGATCGGGGCCAG GGAGGAGACTGGTTTCACGGAAGAGTCCAACAAGAACCCCATCGTCTTCCAGCCGCCTTC CCAGGCCCTCCCTGGGGACCCAGTCCTCCTCCCCAGCCGGAGTGTCACCAAATCGGACTT TACCCCCGTGACCCACCCTCACGGGAGTGAGTTCCTGCCTGTGATGGCCAGAGGCTCTGA GCGGGAGACGGGCTTCAGCCGAGGGAATGAGAGGACTCTGAACCCCAGAGTGCCCCCACC CAGTGGTCCAGAACCCAGCAGCATGAGCCACCGACAGTTCCAGCCCCCGAAGCGGGTGCA ACAGACAAACGTGGCCCTGCTTGGCCGGGAGACTGTGGGGAACAAGGAGCCCACAGGGTT CAGCCTGAACAACCCCAGCTACGTCCGGAGCCCCTATGACCCTGAGCTGGATAATCGCTA CCTGACCACCTACAACCAAGGATACTTCGAGAACATCCCCAAGGGTCTAGATCGAGAAGG CTGGACTCGAGGTGGCATCCAGCCCCAGAAGCCTGGCAGCCGTGCCCTCAACCAGCCGGT CACCTGCACAGAAGCTGTGCCCAGCCCCACAGAGAGCCTGCGGCGCTTGCACCCCTATGT GGGCAGATCCCTGATCTCAGCCGATCCCCTCTACCGAGCCTCACCTCACAGCAGCCACGG CAGCCGCTTCACTGCACCCAACTGAGCCTGAGACCTGGGTTTGCCGACCCCAGAGGACAG GAGCTGGTGACTGTCCCTATTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGTCCTGGAACGTGCACCATACCAACTCTGGCTACTCCCGGGAGAAGCCTATCACGGT GGCCCCCACCAAGGAGGTCAGGAAGGTCCATTTTGACACCCAGGACTATGGGCCCCAGGC CATCACTGGGCTAGAGCCCAAGGATGTGCCCCTGCTCCACCAGCAGCAGAACAAGGGCTC GCTGGAGTGGGAAAACTTCCGGCACGGCCCCCGCTTCATGACTTCCGAGTATAATTCCAA GTATCTCAAGGAGCCTTCAAACCAGCCAGATCTCTTGCAGAAGAAATCGATCGGGGCCAG GGAGGAGACTGGTTTCACGGAAGAGTCCAACAAGAACCCCATCGTCTTCCAGCCGCCTTC CCAGGCCCTCCCTGGGGACCCAGTCCTCCTCCCCAGCCGGAGTGTCACCAAATCGGACTT TACCCCCGTGACCCACCCTCACGGGAGTGAGTTCCTGCCTGTGATGGCCAGAGGCTCTGA GCGGGAGACGGGCTTCAGCCGAGGGAATGAGAGGACTCTGAACCCCAGAGTGCCCCCACC CAGTGGTCCAGAACCCAGCAGCATGAGCCACCGACAGTTCCAGCCCCCGAAGCGGGTGCA ACAGACAAACGTGGCCCTGCTTGGCCGGGAGACTGTGGGGAACAAGGAGCCCACAGGGTT CAGCCTGAACAACCCCAGCTACGTCCGGAGCCCCTATGACCCTGAGCTGGATAATCGCTA CCTGACCACCTACAACCAAGGATACTTCGAGAACATCCCCAAGGGTCTAGATCGAGAAGG CTGGACTCGAGGTGGCATCCAGCCCCAGAAGCCTGGCAGCCGTGCCCTCAACCAGCCGGT CACCTGCACAGAAGCTGTGCCCAGCCCCACAGAGAGCCTGCGGCGCTTGCACCCCTATGT GGGCAGATCCCTGATCTCAGCCGATCCCCTCTACCGAGCCTCACCTCACAGCAGCCACGG CAGCCGCTTCACTGCACCCAACTGAGCCTGAGACCTGGGTTTGCCGACCCCAGAGGACAG GAGCTGGTGACTGTCCCTATTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 79-384, + strand, RNAz p=0.808736 | |
| 97-384, - strand, RNAz p=0.942813 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 79-384, + strand, RNAz p=0.808736 | |
| 97-384, - strand, RNAz p=0.942813 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 62-196, gnl|bosTau2|chr29 (31057324-31057458) | |
| 62-196, gnl|canFam2|chr18 (57978535-57978359) | |
| 62-196, gnl|echTel1|scaffold_323026 (75002-75182) | |
| 62-196, gnl|hg17|chr11 (61008721-61008895) | |
| 62-196, gnl|Hg17|chr11 (61008722-61008855) | |
| 62-196, gnl|loxAfr1|scaffold_88412 (752-928) | |
| 62-196, gnl|mm7|chr19 (10159740-10159568) | |
| 62-196, gnl|Mm7|chr19 (10159737-10159604) | |
| 62-196, gnl|monDom2|scaffold_33 (28460903-28461079) | |
| 62-196, gnl|oryCun1|scaffold_159621 (2875-2701) | |
| 62-196, gnl|panTro1|chr9 (61934729-61934903) | |
| 62-196, gnl|rheMac2|chr14 (12602173-12601999) | |
| 62-196, gnl|rn3|chr1 (213118351-213118184) | |
| 267-384, gnl|bosTau2|chr29 (31058874-31058991) | |
| 267-384, gnl|canFam2|chr18 (57977426-57977135) | |
| 267-384, gnl|echTel1|scaffold_323026 (76673-76922) | |
| 267-384, gnl|hg17|chr11 (61009696-61009979) | |
| 267-384, gnl|Hg17|chr11 (61009844-61009961) | |
| 267-384, gnl|loxAfr1|scaffold_88412 (1895-2165) | |
| 267-384, gnl|mm7|chr19 (10158519-10158309) | |
| 267-384, gnl|Mm7|chr19 (10158437-10158320) | |
| 267-384, gnl|monDom2|scaffold_33 (28462124-28462399) | |
| 267-384, gnl|panTro1|chr9 (61935707-61935990) | |
| 267-384, gnl|rheMac2|chr14 (12601225-12600943) | |
| 267-384, gnl|rn3|chr1 (213117419-213117208) | |
| 525-647, gnl|bosTau2|chr29 (31059963-31060081) | |
| 525-647, gnl|Hg17|chr11 (61010992-61011110) | |
| 525-647, gnl|Mm7|chr19 (10157447-10157329) | |
| 741-906, gnl|bosTau2|chr29 (31062453-31062618) | |
| 741-906, gnl|Hg17|chr11 (61013829-61013994) | |
| 741-906, gnl|Mm7|chr19 (10155227-10155056) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-196, gnl|bosTau2|chr29 (31057324-31057458) | |
| 62-196, gnl|canFam2|chr18 (57978535-57978359) | |
| 62-196, gnl|echTel1|scaffold_323026 (75002-75182) | |
| 62-196, gnl|hg17|chr11 (61008721-61008895) | |
| 62-196, gnl|Hg17|chr11 (61008722-61008855) | |
| 62-196, gnl|loxAfr1|scaffold_88412 (752-928) | |
| 62-196, gnl|mm7|chr19 (10159740-10159568) | |
| 62-196, gnl|Mm7|chr19 (10159737-10159604) | |
| 62-196, gnl|monDom2|scaffold_33 (28460903-28461079) | |
| 62-196, gnl|oryCun1|scaffold_159621 (2875-2701) | |
| 62-196, gnl|panTro1|chr9 (61934729-61934903) | |
| 62-196, gnl|rheMac2|chr14 (12602173-12601999) | |
| 62-196, gnl|rn3|chr1 (213118351-213118184) | |
| 267-384, gnl|bosTau2|chr29 (31058874-31058991) | |
| 267-384, gnl|canFam2|chr18 (57977426-57977135) | |
| 267-384, gnl|echTel1|scaffold_323026 (76673-76922) | |
| 267-384, gnl|hg17|chr11 (61009696-61009979) | |
| 267-384, gnl|Hg17|chr11 (61009844-61009961) | |
| 267-384, gnl|loxAfr1|scaffold_88412 (1895-2165) | |
| 267-384, gnl|mm7|chr19 (10158519-10158309) | |
| 267-384, gnl|Mm7|chr19 (10158437-10158320) | |
| 267-384, gnl|monDom2|scaffold_33 (28462124-28462399) | |
| 267-384, gnl|panTro1|chr9 (61935707-61935990) | |
| 267-384, gnl|rheMac2|chr14 (12601225-12600943) | |
| 267-384, gnl|rn3|chr1 (213117419-213117208) | |
| 525-647, gnl|bosTau2|chr29 (31059963-31060081) | |
| 525-647, gnl|Hg17|chr11 (61010992-61011110) | |
| 525-647, gnl|Mm7|chr19 (10157447-10157329) | |
| 741-906, gnl|bosTau2|chr29 (31062453-31062618) | |
| 741-906, gnl|Hg17|chr11 (61013829-61013994) | |
| 741-906, gnl|Mm7|chr19 (10155227-10155056) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) | |
| eje (0.0988338) |