Non-Coding RNA Search

Ss1.1-rnmm35c_n11.5

Sequence:


               
               CAGCCGCCGCCGCCGCCCTTCGCGCCCGGCTTCGTCCCACCCCCCTCCTCCCGCCGCGGA
TCCACCAGACAGCTAGGCCCCCGGCCGGGGGCAGGGGGGACGCCCCCTCCGGGGCACCCC
CCGGCTCGGAGCCGCCTGCGGGGCCAGCCTCAGCCAGAAGAGGAGGAAGAAGCCGCCGAG
GAGCAGCCCGAGGCCCCAGGGTCTGAGGCGAGCCGCCGCCGCCCCCGCCGCCGCCGCCGC
CGCCGCTGCGGGGAGGAGGGGGAGGAGGAGCGGGAGGAGGGACGAGCTGGTTGGGAGAAG
AGGAAAAAAAGTTTTGAGACTTTTCCGCTGCCGCTGGGAGCCCGAGGCGCGGGGACCGCT
TCGCGCAGCGCTGCCCCGCGAGGCAGGACTTGGGGACCCCAGACCGCACCCTACCACCGC
CTCGGACGCTTGCTCCCTCCCGGCCCCCTGCGCGGCGTTCCCTAGGTGCCCCCATTCCGG
ACCTGCCGTCTGGAGCCGCAAACCCGACTCCCGCGAAGACTTGACCCCAAAGCTCGGGCG
CACCCCCCTGCACACTTCCCCACTCTCAGCCTCTCTGCTGAGCCCCTGCGCATCCAAGGA
CCCTTCTCGGATCCGGGAGACGGAATCTGTCTCAGACCTGCCTCAGCTTTCCTATTCAAG
ACCACCCACCTCTGGTACCAGATCTCGCCCATCTCGGTTTTTTCCGTAGGATACCGAGAA
CCCACCCATCAGAGCCTCCCTTCCACCTCTGCTCCTCCGTTCTCCCTGAGAGCCTCAACT
TCCCTCCCACCCCAGATCCTCCTACCTTTTCTGGGGAGACCCCTCAGCCCCTGTAGGGGC
GGGGCCTCCCTCTTCCTACCCCAGCCGGCTCGCACTCTCGGCTGTGCCGGGGGGCGCCGC
CTCCCCCATGCCGCCTTCGGGGCTGCGGCTCTTGCCGCTGCTGCTGCCGCTGCTGTGGCT
GCTAGTGCTGACGCCTGGCCGGCCGGCCGCCGGACTGTCCACCTGCAAGACCATCGACAT
GGAGCTGGTGAAGCGGAAGCGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCGCCGCCGCCGCCCTTCGCGCCCGGCTTCGTCCCACCCCCCTCCTCCCGCCGCGGA
TCCACCAGACAGCTAGGCCCCCGGCCGGGGGCAGGGGGGACGCCCCCTCCGGGGCACCCC
CCGGCTCGGAGCCGCCTGCGGGGCCAGCCTCAGCCAGAAGAGGAGGAAGAAGCCGCCGAG
GAGCAGCCCGAGGCCCCAGGGTCTGAGGCGAGCCGCCGCCGCCCCCGCCGCCGCCGCCGC
CGCCGCTGCGGGGAGGAGGGGGAGGAGGAGCGGGAGGAGGGACGAGCTGGTTGGGAGAAG
AGGAAAAAAAGTTTTGAGACTTTTCCGCTGCCGCTGGGAGCCCGAGGCGCGGGGACCGCT
TCGCGCAGCGCTGCCCCGCGAGGCAGGACTTGGGGACCCCAGACCGCACCCTACCACCGC
CTCGGACGCTTGCTCCCTCCCGGCCCCCTGCGCGGCGTTCCCTAGGTGCCCCCATTCCGG
ACCTGCCGTCTGGAGCCGCAAACCCGACTCCCGCGAAGACTTGACCCCAAAGCTCGGGCG
CACCCCCCTGCACACTTCCCCACTCTCAGCCTCTCTGCTGAGCCCCTGCGCATCCAAGGA
CCCTTCTCGGATCCGGGAGACGGAATCTGTCTCAGACCTGCCTCAGCTTTCCTATTCAAG
ACCACCCACCTCTGGTACCAGATCTCGCCCATCTCGGTTTTTTCCGTAGGATACCGAGAA
CCCACCCATCAGAGCCTCCCTTCCACCTCTGCTCCTCCGTTCTCCCTGAGAGCCTCAACT
TCCCTCCCACCCCAGATCCTCCTACCTTTTCTGGGGAGACCCCTCAGCCCCTGTAGGGGC
GGGGCCTCCCTCTTCCTACCCCAGCCGGCTCGCACTCTCGGCTGTGCCGGGGGGCGCCGC
CTCCCCCATGCCGCCTTCGGGGCTGCGGCTCTTGCCGCTGCTGCTGCCGCTGCTGTGGCT
GCTAGTGCTGACGCCTGGCCGGCCGGCCGCCGGACTGTCCACCTGCAAGACCATCGACAT
GGAGCTGGTGAAGCGGAAGCGCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q671V1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q671V1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               740-887, - strand, RNAz p=0.999952

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               740-887, - strand, RNAz p=0.999952

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-944, gnl|bosTau2|chr18 (45823001-45822080)
               

               
               6-944, gnl|Hg17|chr19 (46551667-46550753)
               

               
               6-944, gnl|Mm7|chr7 (22461170-22462069)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-944, gnl|bosTau2|chr18 (45823001-45822080)
               

               
               6-944, gnl|Hg17|chr19 (46551667-46550753)
               

               
               6-944, gnl|Mm7|chr7 (22461170-22462069)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	6-944, gnl\|bosTau2\|chr18 (45823001-45822080)
	6-944, gnl\|Hg17\|chr19 (46551667-46550753)
	6-944, gnl\|Mm7\|chr7 (22461170-22462069)