Non-Coding RNA Search

Ss1.1-rnmm36c_e11.5

Sequence:


               
               ATATTTTGTGGCTTTAGTTGGTAAATACGTTAACAGAGCCAAGTACTTGATCTTTTACAT
CATGTCTTCAGCTGTTTGTATTTTAACTTCAGTGATTTCAATGGTCTCAAACACGATTCT
GAGCTTCACATGAATTACATCTCACTGTGGAACTCACAAGTTCGATCCCTGAATTCGGCA
GTTATTATTGCCGAGGTGCCCTGCAGGTACACAGGTGTTAAGGCACACGATCCTGACTAC
AAAGCTGCTTTTGAATTTTGTTATGTTGAAATACTAGAAAAGTGACAGTGATGGCAGCAG
TTATGGTCACAGAAATCATTAAGTCAAGGGAAAACAGTGAGGGGGTCCCGCATAATTATC
TTTTAATAAAGTGAACTTAGGTAGTGGGAAGAAGGAACTAGATACTACTTACCACCGTGT
GTGCGTGTGTGTTGTGTGTGTGTGGCGCGCGCGCGTGCATATTTGTATGAGCATGCACGT
GTGTGTGTGTGTTGTGTGTGTGTAATCCACTCCCTGTTCTTTGAAACTCTTAAGATTAAA
ATAGGGGAGAAATCCTGTGTGTTGCAATGATAGAATTTTGTTGAAACTTCAAGAAATCAA
AAATTCTCCAGGCTCTCCGTCTTGATTTATGCTTGCGTTGTTATGTGCCATATTTGCTTT
GAAATTTTTGATTATCAGAAGTTTTACTAAAAATTTGAAGAAATAATCCATTTTCATCTG
CTTTCTAGATTTCTTAATCGAAGTTCCTAAGACAGAGCTTGTTGATAGCATAGTTTTCTC
AATGCTGTGACTTTGCAGCCGTTACCACTTCAGAGGGGTTTGAATGAGGGAATTGTGTTT
CTTTGTTAAAATAGTTCCTGTTTCTGTAGAAACTTCATTTTGAGGTTAATCTGTGATGGA
TGAGCTATCATAATTCAAGTATACAGTTCTTTTTTTCTATCAACTATTTGTTGTCATGCA
ATAGTAAAGGCATTAAAGATGCAGCAAGCTTATGAAGTACTATTTTCTAGAAGAAATAGG
AGGCATTTTCATCTTTATTACTGTACGTTTGGTTATGCAGACACTTCGATGTTATAAACA
TTTATGTCCCCCATAAATTTGGTCAGAAATCATTTTTGATTGTGTTACGTTAAACAGTCT
ACAGTGGGATAGAGTACTGGGTACCAGTGGTCCAAAGTGAGATAAAAGACTACAATAAAA
ATGCTCGATCTTACAAAAGAAACAGGTTTATGCACTAAACGTTCTGTGCCTTGGTCTAAC
AGTAACACGATGTCTGTAAAATGACAGTAAGTACAGGTGTCGAATCACGTTTTCTCCCCC
TACACTCTGCATTATCCCAGACTGCTAAATGTGTTCTTTCCAAGAAGTTTGATGATTGAA
TTACTGTATACATTTACTGTCCTGTGCGACAGTTTTGCTATTGTTAGAGATTTCAGTAAT
TAAAGTGAGAAACAGAAGCTTAAGTTATTTTCCTTATCAAAATTCTGTTCCTTGGAATCC
TGATTATGACGGTTTTCGTGCTCTTGTGCATCGGATGTCTTAAGCTGAGTGCAGTTTAGG
GGATCCTTTCTAATTACGGGAAGGCACTTCTTTCCTTCAACACTGTGATCTGACCTGTGA
CACATCTGTACTATACACTCTGTAAATGGCTAACAAGTCAATTGCAAACCAACTGAATGT
ACAAATCTTAGTGCTGGTGCTGAAATCTCTTCAGAATAGTCATCACGATCTCAAAGTTTG
TTTCGAAATTTGCAAGCATCAAGTGTCAGTCAAAACTGAAGATGAAACGCTCATGAACGT
TGACTCCTCGTGCTCTAGGCGTACTTCCGTTTCAGATTTGCTGGTTCTCTGCTATTCTTA
CCGTACTGTTTTCATTTAAATTTCTTACACGCTAACGTCGTTTGTGCGACTGAAATAAAA
CTGCAGTATATATATGTTGCTGGTTTGTGACACTTAGCTAACCTTCTGACCTAATCTGTT
GGTTCTAAAATAAGTTGTACGGAATGTGAAAAACACGTTTTAAAGTCCATGACTTCACTG
CTTAAAGTTTACATATCACAACACTGTTCTTTAAAGATTTCATAGGCATAAATACTAAGT
AATGTATACAAAGGGAATATGTGATAATGTATCTACCTTTTCCTTGAAATAACTGTTGGG
TGTTCCCCATGTGTTCTCATTTTCTCTGGGCTCAGCTTGGTACAGTGTCTTACTCTAACA
AAGGATTGATAAATGTTTAAGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATTTTGTGGCTTTAGTTGGTAAATACGTTAACAGAGCCAAGTACTTGATCTTTTACAT
CATGTCTTCAGCTGTTTGTATTTTAACTTCAGTGATTTCAATGGTCTCAAACACGATTCT
GAGCTTCACATGAATTACATCTCACTGTGGAACTCACAAGTTCGATCCCTGAATTCGGCA
GTTATTATTGCCGAGGTGCCCTGCAGGTACACAGGTGTTAAGGCACACGATCCTGACTAC
AAAGCTGCTTTTGAATTTTGTTATGTTGAAATACTAGAAAAGTGACAGTGATGGCAGCAG
TTATGGTCACAGAAATCATTAAGTCAAGGGAAAACAGTGAGGGGGTCCCGCATAATTATC
TTTTAATAAAGTGAACTTAGGTAGTGGGAAGAAGGAACTAGATACTACTTACCACCGTGT
GTGCGTGTGTGTTGTGTGTGTGTGGCGCGCGCGCGTGCATATTTGTATGAGCATGCACGT
GTGTGTGTGTGTTGTGTGTGTGTAATCCACTCCCTGTTCTTTGAAACTCTTAAGATTAAA
ATAGGGGAGAAATCCTGTGTGTTGCAATGATAGAATTTTGTTGAAACTTCAAGAAATCAA
AAATTCTCCAGGCTCTCCGTCTTGATTTATGCTTGCGTTGTTATGTGCCATATTTGCTTT
GAAATTTTTGATTATCAGAAGTTTTACTAAAAATTTGAAGAAATAATCCATTTTCATCTG
CTTTCTAGATTTCTTAATCGAAGTTCCTAAGACAGAGCTTGTTGATAGCATAGTTTTCTC
AATGCTGTGACTTTGCAGCCGTTACCACTTCAGAGGGGTTTGAATGAGGGAATTGTGTTT
CTTTGTTAAAATAGTTCCTGTTTCTGTAGAAACTTCATTTTGAGGTTAATCTGTGATGGA
TGAGCTATCATAATTCAAGTATACAGTTCTTTTTTTCTATCAACTATTTGTTGTCATGCA
ATAGTAAAGGCATTAAAGATGCAGCAAGCTTATGAAGTACTATTTTCTAGAAGAAATAGG
AGGCATTTTCATCTTTATTACTGTACGTTTGGTTATGCAGACACTTCGATGTTATAAACA
TTTATGTCCCCCATAAATTTGGTCAGAAATCATTTTTGATTGTGTTACGTTAAACAGTCT
ACAGTGGGATAGAGTACTGGGTACCAGTGGTCCAAAGTGAGATAAAAGACTACAATAAAA
ATGCTCGATCTTACAAAAGAAACAGGTTTATGCACTAAACGTTCTGTGCCTTGGTCTAAC
AGTAACACGATGTCTGTAAAATGACAGTAAGTACAGGTGTCGAATCACGTTTTCTCCCCC
TACACTCTGCATTATCCCAGACTGCTAAATGTGTTCTTTCCAAGAAGTTTGATGATTGAA
TTACTGTATACATTTACTGTCCTGTGCGACAGTTTTGCTATTGTTAGAGATTTCAGTAAT
TAAAGTGAGAAACAGAAGCTTAAGTTATTTTCCTTATCAAAATTCTGTTCCTTGGAATCC
TGATTATGACGGTTTTCGTGCTCTTGTGCATCGGATGTCTTAAGCTGAGTGCAGTTTAGG
GGATCCTTTCTAATTACGGGAAGGCACTTCTTTCCTTCAACACTGTGATCTGACCTGTGA
CACATCTGTACTATACACTCTGTAAATGGCTAACAAGTCAATTGCAAACCAACTGAATGT
ACAAATCTTAGTGCTGGTGCTGAAATCTCTTCAGAATAGTCATCACGATCTCAAAGTTTG
TTTCGAAATTTGCAAGCATCAAGTGTCAGTCAAAACTGAAGATGAAACGCTCATGAACGT
TGACTCCTCGTGCTCTAGGCGTACTTCCGTTTCAGATTTGCTGGTTCTCTGCTATTCTTA
CCGTACTGTTTTCATTTAAATTTCTTACACGCTAACGTCGTTTGTGCGACTGAAATAAAA
CTGCAGTATATATATGTTGCTGGTTTGTGACACTTAGCTAACCTTCTGACCTAATCTGTT
GGTTCTAAAATAAGTTGTACGGAATGTGAAAAACACGTTTTAAAGTCCATGACTTCACTG
CTTAAAGTTTACATATCACAACACTGTTCTTTAAAGATTTCATAGGCATAAATACTAAGT
AATGTATACAAAGGGAATATGTGATAATGTATCTACCTTTTCCTTGAAATAACTGTTGGG
TGTTCCCCATGTGTTCTCATTTTCTCTGGGCTCAGCTTGGTACAGTGTCTTACTCTAACA
AAGGATTGATAAATGTTTAAGTTT

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               365-881, gnl|bosTau2|chr13 (10100052-10100553)
               

               
               365-881, gnl|Hg17|chr1 (221990803-221990324)
               


               
               1383-1935, gnl|bosTau2|chr9 (23661448-23660902)
               

               
               1383-1935, gnl|Hg17|chr1 (221989863-221989250)
               

               
               1383-1935, gnl|Mm7|chr1 (181888191-181887648)
               


               
               1579-1934, gnl|bosTau2|chr9 (7869479-7869827)
               

               
               1579-1934, gnl|Hg17|chr1 (221989621-221989251)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               365-881, gnl|bosTau2|chr13 (10100052-10100553)
               

               
               365-881, gnl|Hg17|chr1 (221990803-221990324)
               


               
               1383-1935, gnl|bosTau2|chr9 (23661448-23660902)
               

               
               1383-1935, gnl|Hg17|chr1 (221989863-221989250)
               

               
               1383-1935, gnl|Mm7|chr1 (181888191-181887648)
               


               
               1579-1934, gnl|bosTau2|chr9 (7869479-7869827)
               

               
               1579-1934, gnl|Hg17|chr1 (221989621-221989251)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

Help | Less info


               
               isp (1.05263)
               

               
               vin (0.665115)
               

               
               mga (0.64082)
               

               
               bla (0.497389)
               

               
               tra (0.492368)
               

               
               aor (0.390549)
               

               
               ova (0.387397)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (1.05263)
               

               
               vin (0.665115)
               

               
               mga (0.64082)
               

               
               bla (0.497389)
               

               
               tra (0.492368)
               

               
               aor (0.390549)
               

               
               ova (0.387397)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

	365-881, gnl\|bosTau2\|chr13 (10100052-10100553)
	365-881, gnl\|Hg17\|chr1 (221990803-221990324)

	1383-1935, gnl\|bosTau2\|chr9 (23661448-23660902)
	1383-1935, gnl\|Hg17\|chr1 (221989863-221989250)
	1383-1935, gnl\|Mm7\|chr1 (181888191-181887648)

	1579-1934, gnl\|bosTau2\|chr9 (7869479-7869827)
	1579-1934, gnl\|Hg17\|chr1 (221989621-221989251)

	isp (1.05263)
	vin (0.665115)
	mga (0.64082)
	bla (0.497389)
	tra (0.492368)
	aor (0.390549)
	ova (0.387397)
	bfe (0.299715)
	lin (0.291206)
	ldo (0.291008)
	ste (0.270416)
	pla (0.267344)
	cbe (0.239234)
	mgp (0.230681)
	sag (0.182715)
	sto (0.179824)
	gul (0.177588)
	sin (0.174948)
	eye (0.170503)
	tbr (0.154178)
	ski (0.146735)
	liv (0.146284)
	lyg (0.133103)
	nmm (0.132802)
	ese (0.126502)
	spc (0.113366)