Ss1.1-rnmm36c_h14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTTCTCTTACCCCCAGGACACGGCCATCTGCCTTCTTGCTGTGACCCGCTACATGACA TTGACCTTCTCTGACAATCAAAACAATGTCACCTTTAGCAATGAAGCATCCAGTGAGATT GTCCAGGTTAACAGTGACAACCGCTTATTGGTCCAGCGTTCAGAACTGCCAAGAGCAGGT GGACAATACACAGTAGATGTGGAGGGACAAGGTTGCACATTCATCCAGGCCACCCTGAAG TACAATGTGCTTCTACCTAAGAAGGAATCTGGATTTTCCCTTTCCTTGGAAATTGTAAGG AAAAACTCTTCCGATACATTCCAGAGTCACTTTGACCTGACAATAACCCTCCAATATACT GGAATTCACAACAACTCCAACATGGTCCTTGTTGATGTAAAAATGCTCTCAGGATTTACT CCAGTCATGTCATCCATTGAGGAGCTTGAAAGCAATGGTCAAGTAATGAAGAGTGAAGTC AAGAATGACCATGTTCTTTTCTTCCTAGAAAATGTTTGGGGTATAGCAAATAGTTTCTCC TTCTCTGTTGAGCAAAGCAACCGTGTGTCCAACATTCAGCCAGCCCCTGTCATGGTCTAT GATTATTATGAAAAAGATGAATATGCCCTTGCTTCTTACAACATCAACAGTGTCTCAGTT TCCCAGTGAAACCAAACAAAGTATAAAATAGAAATAGAAAACTATTTACTTTGAACAAAC TCCCTCTTCTGTATCAAACCTGGAAGAAAACCATGAACCACATCAAGTTCTGAATAGCCT GCAATCTGCCATGAAGTCTTATCAGATTTTGTTTCTTTTCTATTCCATTAAACCCTCTTA TTCTGCAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTTCTCTTACCCCCAGGACACGGCCATCTGCCTTCTTGCTGTGACCCGCTACATGACA TTGACCTTCTCTGACAATCAAAACAATGTCACCTTTAGCAATGAAGCATCCAGTGAGATT GTCCAGGTTAACAGTGACAACCGCTTATTGGTCCAGCGTTCAGAACTGCCAAGAGCAGGT GGACAATACACAGTAGATGTGGAGGGACAAGGTTGCACATTCATCCAGGCCACCCTGAAG TACAATGTGCTTCTACCTAAGAAGGAATCTGGATTTTCCCTTTCCTTGGAAATTGTAAGG AAAAACTCTTCCGATACATTCCAGAGTCACTTTGACCTGACAATAACCCTCCAATATACT GGAATTCACAACAACTCCAACATGGTCCTTGTTGATGTAAAAATGCTCTCAGGATTTACT CCAGTCATGTCATCCATTGAGGAGCTTGAAAGCAATGGTCAAGTAATGAAGAGTGAAGTC AAGAATGACCATGTTCTTTTCTTCCTAGAAAATGTTTGGGGTATAGCAAATAGTTTCTCC TTCTCTGTTGAGCAAAGCAACCGTGTGTCCAACATTCAGCCAGCCCCTGTCATGGTCTAT GATTATTATGAAAAAGATGAATATGCCCTTGCTTCTTACAACATCAACAGTGTCTCAGTT TCCCAGTGAAACCAAACAAAGTATAAAATAGAAATAGAAAACTATTTACTTTGAACAAAC TCCCTCTTCTGTATCAAACCTGGAAGAAAACCATGAACCACATCAAGTTCTGAATAGCCT GCAATCTGCCATGAAGTCTTATCAGATTTTGTTTCTTTTCTATTCCATTAAACCCTCTTA TTCTGCAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 16-229, gnl|bosTau2|chr5 (59355381-59355594) | |
| 16-229, gnl|canFam2|chr27 (39478774-39478413) | |
| 16-229, gnl|dasNov1|scaffold_6205 (8444-8101) | |
| 16-229, gnl|echTel1|scaffold_223173 (1778-1486) | |
| 16-229, gnl|hg17|chr12 (9446132-9446454) | |
| 16-229, gnl|loxAfr1|scaffold_1156 (19006-19331) | |
| 16-229, gnl|mm7|chr6 (128567987-128568324) | |
| 16-229, gnl|Mm7|chr6 (128568376-128568163) | |
| 16-229, gnl|oryCun1|scaffold_212483 (5547-5866) | |
| 16-229, gnl|panTro1|chr10 (10015214-10015536) | |
| 16-229, gnl|rheMac2|chr11 (9717966-9718284) | |
| 16-229, gnl|rn3|chr4 (165810236-165810560) | |
| 514-616, gnl|bosTau2|chr5 (59359633-59359735) | |
| 514-616, gnl|canFam2|chr27 (39481850-39481578) | |
| 514-616, gnl|dasNov1|scaffold_6205 (17908-17683) | |
| 514-616, gnl|echTel1|scaffold_305425 (3341-3588) | |
| 514-616, gnl|hg17|chr12 (9442238-9442463) | |
| 514-616, gnl|Hg17|chr12 (9442347-9442245) | |
| 514-616, gnl|mm7|chr6 (128564236-128564456) | |
| 514-616, gnl|Mm7|chr6 (128564342-128564243) | |
| 514-616, gnl|oryCun1|scaffold_212483 (1948-2171) | |
| 514-616, gnl|panTro1|chr10 (10011069-10011294) | |
| 514-616, gnl|rheMac2|chr11 (9714109-9714334) | |
| 514-616, gnl|rn3|chr4 (165806846-165807066) | |
| 695-815, gnl|bosTau2|chr5 (59361158-59361278) | |
| 695-815, gnl|canFam2|chr27 (39483585-39483140) | |
| 695-815, gnl|dasNov1|scaffold_6205 (19797-19380) | |
| 695-815, gnl|echTel1|scaffold_305425 (291-704) | |
| 695-815, gnl|hg17|chr12 (9440756-9441189) | |
| 695-815, gnl|Hg17|chr12 (9441076-9440946) | |
| 695-815, gnl|loxAfr1|scaffold_1156 (12472-12898) | |
| 695-815, gnl|mm7|chr6 (128562929-128563394) | |
| 695-815, gnl|Mm7|chr6 (128563257-128563086) | |
| 695-815, gnl|oryCun1|scaffold_212483 (970-547) | |
| 695-815, gnl|panTro1|chr10 (10009606-10010040) | |
| 695-815, gnl|rheMac2|chr11 (9712632-9713064) | |
| 695-815, gnl|rn3|chr4 (165805649-165806046) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-229, gnl|bosTau2|chr5 (59355381-59355594) | |
| 16-229, gnl|canFam2|chr27 (39478774-39478413) | |
| 16-229, gnl|dasNov1|scaffold_6205 (8444-8101) | |
| 16-229, gnl|echTel1|scaffold_223173 (1778-1486) | |
| 16-229, gnl|hg17|chr12 (9446132-9446454) | |
| 16-229, gnl|loxAfr1|scaffold_1156 (19006-19331) | |
| 16-229, gnl|mm7|chr6 (128567987-128568324) | |
| 16-229, gnl|Mm7|chr6 (128568376-128568163) | |
| 16-229, gnl|oryCun1|scaffold_212483 (5547-5866) | |
| 16-229, gnl|panTro1|chr10 (10015214-10015536) | |
| 16-229, gnl|rheMac2|chr11 (9717966-9718284) | |
| 16-229, gnl|rn3|chr4 (165810236-165810560) | |
| 514-616, gnl|bosTau2|chr5 (59359633-59359735) | |
| 514-616, gnl|canFam2|chr27 (39481850-39481578) | |
| 514-616, gnl|dasNov1|scaffold_6205 (17908-17683) | |
| 514-616, gnl|echTel1|scaffold_305425 (3341-3588) | |
| 514-616, gnl|hg17|chr12 (9442238-9442463) | |
| 514-616, gnl|Hg17|chr12 (9442347-9442245) | |
| 514-616, gnl|mm7|chr6 (128564236-128564456) | |
| 514-616, gnl|Mm7|chr6 (128564342-128564243) | |
| 514-616, gnl|oryCun1|scaffold_212483 (1948-2171) | |
| 514-616, gnl|panTro1|chr10 (10011069-10011294) | |
| 514-616, gnl|rheMac2|chr11 (9714109-9714334) | |
| 514-616, gnl|rn3|chr4 (165806846-165807066) | |
| 695-815, gnl|bosTau2|chr5 (59361158-59361278) | |
| 695-815, gnl|canFam2|chr27 (39483585-39483140) | |
| 695-815, gnl|dasNov1|scaffold_6205 (19797-19380) | |
| 695-815, gnl|echTel1|scaffold_305425 (291-704) | |
| 695-815, gnl|hg17|chr12 (9440756-9441189) | |
| 695-815, gnl|Hg17|chr12 (9441076-9440946) | |
| 695-815, gnl|loxAfr1|scaffold_1156 (12472-12898) | |
| 695-815, gnl|mm7|chr6 (128562929-128563394) | |
| 695-815, gnl|Mm7|chr6 (128563257-128563086) | |
| 695-815, gnl|oryCun1|scaffold_212483 (970-547) | |
| 695-815, gnl|panTro1|chr10 (10009606-10010040) | |
| 695-815, gnl|rheMac2|chr11 (9712632-9713064) | |
| 695-815, gnl|rn3|chr4 (165805649-165806046) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| mgm (0.721371) | |
| clu (0.239292) | |
| mgp (0.230681) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| tra (0.123092) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgm (0.721371) | |
| clu (0.239292) | |
| mgp (0.230681) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| tra (0.123092) |