Ss1.1-rnmm36c_n22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTGCAGAGACATTTACTCTTCGTGGGGGGCAGGGGGGTTGGGGGGAGTTTCAATAAAT AGACATCAGAGACCAGCACGGCTGAGGGGACCCGGGTGAGGACCGGGGCCAGCAGGGGGC AGTCCAGCTACTGGGGCCAGGGCTGCTCCCCGCGAAGGGTGTCCTGCCTCTCCCTGTCGG CGTCACCCCACCTCTGGGGCGCGATCTTCTTCTTGGGCCCGTGGGGCGGGGGGCCGATGA GGGCCTCAATGTCCTCGTAGCTGATGACTTCCCTCTCCAGCAGGGCGCCTGCCAGCGCCT GCAGCTTGTCCAGGTTGTCCCGCAGCACCTTCTCCGTGTGTCTGTAGGCCGTGGCCACCA GCAGCCGTGCCTCGTGGTCCATCATCTGCTGGAGGCCCTGGCTGAAGGGACGCCGCCCGA CGCCCGAGAGGCCCTCCTGCGCCTCGGGGAAGGAGACGGGCCCGACGCTGGGCGCCATCC CGAACTGCTTCACCATGGAGTAGGCGATGCGGGTGACCTTGCGCAGGTCGTCCTGGGCCC CCGAAGTCACTCTGTTGAAGGAGATGGACTCGGCTGCCCGGCCGCCCAGGGCCATACACA TCCGCTCAAACAGCTGCTCCCTGGTGAACAGGTGCTGGTCTCTCGGGAGCATCTGCGCGA AGCCCAGGGCTGCGTTTGTCCGCGGCGTGATGGACACCTTCATCACGGCCTCCGTGTGCT CCAGCAGCCAGCCGACCAGCGCGTGGCCCGACTCGTGGAAGGCGACCACCTTCTGCTCCT CCCTGGAGAGGACCTGGCTCTTCTTGGCAGGACCGGCCACCACGCGCTCCACGGCGTACT CCAGGTTGGACGTGTGCACAGCCGGGTGCCCCTCCCGCGCGGCGTGCAGCGCGGCCTCGT TACAGATGTTGGCGATGTCGGCACCACTGAAGCCAGGCGTCAGCTCAGCCAGACGCTGGG AGTAGAAGCTGCTGGCCTGCGTCAGCTTCAGGCTCTTCAGGTGCTGCTCGAAGATCTCCC TCCTCTCCTGCAGCGTAGGGAGGTCGATGAACACGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTGCAGAGACATTTACTCTTCGTGGGGGGCAGGGGGGTTGGGGGGAGTTTCAATAAAT AGACATCAGAGACCAGCACGGCTGAGGGGACCCGGGTGAGGACCGGGGCCAGCAGGGGGC AGTCCAGCTACTGGGGCCAGGGCTGCTCCCCGCGAAGGGTGTCCTGCCTCTCCCTGTCGG CGTCACCCCACCTCTGGGGCGCGATCTTCTTCTTGGGCCCGTGGGGCGGGGGGCCGATGA GGGCCTCAATGTCCTCGTAGCTGATGACTTCCCTCTCCAGCAGGGCGCCTGCCAGCGCCT GCAGCTTGTCCAGGTTGTCCCGCAGCACCTTCTCCGTGTGTCTGTAGGCCGTGGCCACCA GCAGCCGTGCCTCGTGGTCCATCATCTGCTGGAGGCCCTGGCTGAAGGGACGCCGCCCGA CGCCCGAGAGGCCCTCCTGCGCCTCGGGGAAGGAGACGGGCCCGACGCTGGGCGCCATCC CGAACTGCTTCACCATGGAGTAGGCGATGCGGGTGACCTTGCGCAGGTCGTCCTGGGCCC CCGAAGTCACTCTGTTGAAGGAGATGGACTCGGCTGCCCGGCCGCCCAGGGCCATACACA TCCGCTCAAACAGCTGCTCCCTGGTGAACAGGTGCTGGTCTCTCGGGAGCATCTGCGCGA AGCCCAGGGCTGCGTTTGTCCGCGGCGTGATGGACACCTTCATCACGGCCTCCGTGTGCT CCAGCAGCCAGCCGACCAGCGCGTGGCCCGACTCGTGGAAGGCGACCACCTTCTGCTCCT CCCTGGAGAGGACCTGGCTCTTCTTGGCAGGACCGGCCACCACGCGCTCCACGGCGTACT CCAGGTTGGACGTGTGCACAGCCGGGTGCCCCTCCCGCGCGGCGTGCAGCGCGGCCTCGT TACAGATGTTGGCGATGTCGGCACCACTGAAGCCAGGCGTCAGCTCAGCCAGACGCTGGG AGTAGAAGCTGCTGGCCTGCGTCAGCTTCAGGCTCTTCAGGTGCTGCTCGAAGATCTCCC TCCTCTCCTGCAGCGTAGGGAGGTCGATGAACACGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 161-296, gnl|bosTau2|chr18 (15375530-15375395) | |
| 161-296, gnl|canFam2|chr5 (66983547-66983354) | |
| 161-296, gnl|danRer3|chr7 (49069347-49069531) | |
| 161-296, gnl|dasNov1|scaffold_81178 (982-806) | |
| 161-296, gnl|echTel1|scaffold_238619 (410-236) | |
| 161-296, gnl|fr1|chrUn (95171473-95171300) | |
| 161-296, gnl|galGal2|chr11 (18773964-18773770) | |
| 161-296, gnl|hg17|chr16 (88150770-88150970) | |
| 161-296, gnl|Hg17|chr16 (88150930-88150795) | |
| 161-296, gnl|loxAfr1|scaffold_28429 (30709-30518) | |
| 161-296, gnl|mm7|chr8 (121739063-121739258) | |
| 161-296, gnl|Mm7|chr8 (121739223-121739088) | |
| 161-296, gnl|monDom2|scaffold_23 (6703519-6703322) | |
| 161-296, gnl|oryCun1|scaffold_114115 (2604-2410) | |
| 161-296, gnl|panTro1|chr18 (83168505-83168705) | |
| 161-296, gnl|rheMac2|chr20 (87685477-87685677) | |
| 161-296, gnl|rn3|chr19 (53438240-53438436) | |
| 161-296, gnl|tetNig1|chr5 (7645792-7645962) | |
| 161-296, gnl|xenTro1|scaffold_13 (2564698-2564889) | |
| 373-547, gnl|bosTau2|chr18 (15373441-15373267) | |
| 373-547, gnl|Hg17|chr16 (88147870-88147696) | |
| 373-547, gnl|Mm7|chr8 (121736336-121736164) | |
| 694-810, gnl|bosTau2|chr18 (15371600-15371484) | |
| 694-810, gnl|canFam2|chr5 (66988851-66988717) | |
| 694-810, gnl|danRer3|chr7 (49062817-49062944) | |
| 694-810, gnl|dasNov1|scaffold_81178 (6653-6517) | |
| 694-810, gnl|echTel1|scaffold_238619 (2179-2023) | |
| 694-810, gnl|fr1|chrUn (95172386-95172250) | |
| 694-810, gnl|galGal2|chr11 (18777950-18777794) | |
| 694-810, gnl|hg17|chr16 (88144381-88144544) | |
| 694-810, gnl|Hg17|chr16 (88144522-88144406) | |
| 694-810, gnl|loxAfr1|scaffold_28429 (34212-34055) | |
| 694-810, gnl|mm7|chr8 (121733315-121733457) | |
| 694-810, gnl|Mm7|chr8 (121733449-121733333) | |
| 694-810, gnl|monDom2|scaffold_23 (6717595-6717461) | |
| 694-810, gnl|oryCun1|scaffold_114115 (8676-8533) | |
| 694-810, gnl|panTro1|chr18 (83162016-83162179) | |
| 694-810, gnl|rheMac2|chr20 (87677972-87678118) | |
| 694-810, gnl|rn3|chr19 (53432883-53433018) | |
| 694-810, gnl|tetNig1|chr5 (7644959-7645082) | |
| 694-810, gnl|xenTro1|scaffold_13 (2560220-2560353) | |
| 923-1029, gnl|bosTau2|chr18 (15369595-15369489) | |
| 923-1029, gnl|canFam2|chr5 (66991781-66991671) | |
| 923-1029, gnl|danRer3|chr7 (49059071-49059181) | |
| 923-1029, gnl|fr1|chrUn (95172798-95172691) | |
| 923-1029, gnl|galGal2|chr11 (18782445-18782335) | |
| 923-1029, gnl|hg17|chr16 (88140566-88140676) | |
| 923-1029, gnl|Hg17|chr16 (88140671-88140565) | |
| 923-1029, gnl|loxAfr1|scaffold_28429 (37001-36870) | |
| 923-1029, gnl|mm7|chr8 (121730639-121730749) | |
| 923-1029, gnl|Mm7|chr8 (121730744-121730638) | |
| 923-1029, gnl|oryCun1|scaffold_114115 (11797-11687) | |
| 923-1029, gnl|panTro1|chr18 (83158029-83158139) | |
| 923-1029, gnl|rheMac2|chr20 (87672701-87672811) | |
| 923-1029, gnl|rn3|chr19 (53430248-53430358) | |
| 923-1029, gnl|tetNig1|chr5 (7644543-7644650) | |
| 923-1029, gnl|xenTro1|scaffold_13 (2554713-2554820) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 161-296, gnl|bosTau2|chr18 (15375530-15375395) | |
| 161-296, gnl|canFam2|chr5 (66983547-66983354) | |
| 161-296, gnl|danRer3|chr7 (49069347-49069531) | |
| 161-296, gnl|dasNov1|scaffold_81178 (982-806) | |
| 161-296, gnl|echTel1|scaffold_238619 (410-236) | |
| 161-296, gnl|fr1|chrUn (95171473-95171300) | |
| 161-296, gnl|galGal2|chr11 (18773964-18773770) | |
| 161-296, gnl|hg17|chr16 (88150770-88150970) | |
| 161-296, gnl|Hg17|chr16 (88150930-88150795) | |
| 161-296, gnl|loxAfr1|scaffold_28429 (30709-30518) | |
| 161-296, gnl|mm7|chr8 (121739063-121739258) | |
| 161-296, gnl|Mm7|chr8 (121739223-121739088) | |
| 161-296, gnl|monDom2|scaffold_23 (6703519-6703322) | |
| 161-296, gnl|oryCun1|scaffold_114115 (2604-2410) | |
| 161-296, gnl|panTro1|chr18 (83168505-83168705) | |
| 161-296, gnl|rheMac2|chr20 (87685477-87685677) | |
| 161-296, gnl|rn3|chr19 (53438240-53438436) | |
| 161-296, gnl|tetNig1|chr5 (7645792-7645962) | |
| 161-296, gnl|xenTro1|scaffold_13 (2564698-2564889) | |
| 373-547, gnl|bosTau2|chr18 (15373441-15373267) | |
| 373-547, gnl|Hg17|chr16 (88147870-88147696) | |
| 373-547, gnl|Mm7|chr8 (121736336-121736164) | |
| 694-810, gnl|bosTau2|chr18 (15371600-15371484) | |
| 694-810, gnl|canFam2|chr5 (66988851-66988717) | |
| 694-810, gnl|danRer3|chr7 (49062817-49062944) | |
| 694-810, gnl|dasNov1|scaffold_81178 (6653-6517) | |
| 694-810, gnl|echTel1|scaffold_238619 (2179-2023) | |
| 694-810, gnl|fr1|chrUn (95172386-95172250) | |
| 694-810, gnl|galGal2|chr11 (18777950-18777794) | |
| 694-810, gnl|hg17|chr16 (88144381-88144544) | |
| 694-810, gnl|Hg17|chr16 (88144522-88144406) | |
| 694-810, gnl|loxAfr1|scaffold_28429 (34212-34055) | |
| 694-810, gnl|mm7|chr8 (121733315-121733457) | |
| 694-810, gnl|Mm7|chr8 (121733449-121733333) | |
| 694-810, gnl|monDom2|scaffold_23 (6717595-6717461) | |
| 694-810, gnl|oryCun1|scaffold_114115 (8676-8533) | |
| 694-810, gnl|panTro1|chr18 (83162016-83162179) | |
| 694-810, gnl|rheMac2|chr20 (87677972-87678118) | |
| 694-810, gnl|rn3|chr19 (53432883-53433018) | |
| 694-810, gnl|tetNig1|chr5 (7644959-7645082) | |
| 694-810, gnl|xenTro1|scaffold_13 (2560220-2560353) | |
| 923-1029, gnl|bosTau2|chr18 (15369595-15369489) | |
| 923-1029, gnl|canFam2|chr5 (66991781-66991671) | |
| 923-1029, gnl|danRer3|chr7 (49059071-49059181) | |
| 923-1029, gnl|fr1|chrUn (95172798-95172691) | |
| 923-1029, gnl|galGal2|chr11 (18782445-18782335) | |
| 923-1029, gnl|hg17|chr16 (88140566-88140676) | |
| 923-1029, gnl|Hg17|chr16 (88140671-88140565) | |
| 923-1029, gnl|loxAfr1|scaffold_28429 (37001-36870) | |
| 923-1029, gnl|mm7|chr8 (121730639-121730749) | |
| 923-1029, gnl|Mm7|chr8 (121730744-121730638) | |
| 923-1029, gnl|oryCun1|scaffold_114115 (11797-11687) | |
| 923-1029, gnl|panTro1|chr18 (83158029-83158139) | |
| 923-1029, gnl|rheMac2|chr20 (87672701-87672811) | |
| 923-1029, gnl|rn3|chr19 (53430248-53430358) | |
| 923-1029, gnl|tetNig1|chr5 (7644543-7644650) | |
| 923-1029, gnl|xenTro1|scaffold_13 (2554713-2554820) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| mas (0.630915) | |
| ece (0.45861) | |
| cov (0.264306) | |
| jej (0.197844) | |
| fbs (0.175346) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.630915) | |
| ece (0.45861) | |
| cov (0.264306) | |
| jej (0.197844) | |
| fbs (0.175346) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |