Non-Coding RNA Search

Ss1.1-rnmm37c_k21.5

Sequence:


               
               CTTCTGGAAACTGGAGGACCCAGATAACCGTAGGGCTATCTGAATATGAGACCCCAGCAC
ATCCTTCGTACACCAGCTGCTATGGCAACATCTATAATCCTTTGTCCTCTCCAGGCAGAC
AGTACACAGAGACCAGTCAACTGGACGGTACAGATGGAAGCCGGCTGGAGGACAGCCTGG
AGAGTAGTGAGCAGAGGCTCTTTTGGCACGAAGACTCAAAGCCTGGAACATTAGTCTGAA
CGGCAGTTGTGCCTCTGGACCACACACAGCACTGCGTCCTCACACTAGCGTGCCTTGCAG
AACGTGTTCGTCTTCCCAGAGGGCTGCTGGCTTTGGAAACCTAGAGGCATCCACGCCGGA
AGAGAGGACTCACATGGCCCCGGAAGTGAATCACACACTAAGCCGCACAAAACCCCTGCA
CGACCACCCGCCTTTCCAAGTGCAGGCGCTAACCTCACAGAGCAAGGCCGGACCGCACGT
GAGCCCCGGCCAAGAAGGACTCAGCCCTTATCGATAGCAGGCACTTTTTAAGGGAATAAA
AGTTGTGGAAGACAGACCTCAAAACGCTGATAAGTGCGTTCAGGGACTCCATAAGGAAGG
AAAGAAGGACGGGAGATTTCAGAGCACAATTCAGAATGATGACAGAAGGGAAACCAGAAG
CTCCTTATAGTCACTGACGTTTGAATTGGTAAGCAGGAGAAGAATTGCATACTGTGTCTA
CCTGGACATGAGCAGTTTAGACAGTATTTGAAAATTACTTGAAAAGCTGGATTTTCATGA
AGTTCTGGATGAGTGTAAATGTTTCTAGTCAATGATCAAGACTGATGGTTTTCATAAGCA
CCATAAAATGGGTTCTGGAAAGACTTATTGCTGTAGCATCCTGTAATATAACATTCTGGT
AGCAGATTGGGGAAAATGAAGCAGCCCATTGAATAACTGACAAACTCTGCTTGGAGAATT
TTCTGAGGTACAATATCACTGAGTTCCTTTCTTTCTTTCTACGCCAATGGCATTATTATT
CAGGCTGGTAACTCTCCAACTCGGCTGTCATTGAAGTGGTAAACTTGACATGGAGAGTTT
TTATAATCAAGAGTTTGAAAAAGTATTTTAGGGTGATACAGAAAGAACCCAACACAGCAT
AAAGAAAAAAGAAACACACAGACGAAAACCACATCATTTAGATGAATTGCGTGCCTTAAA
ATTGTGGACATTAGAAAATGAAGCATATTGTCTGGATTCCACAGGTAGTTCTAAGTCACC
AAGTGACAAAAACAAAATTAGTTATAAAAAACAAAAGCAAAAAAACCTCCAAGCTGCAGT
AGATTTAATTATGAGGCTAAAACTACCTCATACTTTTTCTTGGGAGAACTAATTCGCTGT
GGTTTATTATAGGGTGTTTTGGTTTTGTTTTTGTTTTTGTTTTAAGCAACTATTTCCATA
TTCCAGATACATCTTTTTTGTCACCTTTACTCTGCTTCAGAATTCCATAAAAGGTGCTCC
TTCCATCTCTTTTATACAGGTTTCTTGTTCATATTGTGAATAGAGAAGTTTCTGAACAAC
TTTTTGGGAACATTTTCTACATATATTCCAAAGCATGTAATATATACATAAAGATGATTT
GTTAAACTGGTCCTTAGTCATTTGTATTATTAAAAATGAAGTTTGGGGAAAAAATTGGAA
AACCGAAAGACATGCAAAAAATAACTTATTTCTTTTTGCATATTTGTATAGCCTTCTAGA
AACAGAAATACCTTTTGCATATTCTTTTACTGTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTGGAAACTGGAGGACCCAGATAACCGTAGGGCTATCTGAATATGAGACCCCAGCAC
ATCCTTCGTACACCAGCTGCTATGGCAACATCTATAATCCTTTGTCCTCTCCAGGCAGAC
AGTACACAGAGACCAGTCAACTGGACGGTACAGATGGAAGCCGGCTGGAGGACAGCCTGG
AGAGTAGTGAGCAGAGGCTCTTTTGGCACGAAGACTCAAAGCCTGGAACATTAGTCTGAA
CGGCAGTTGTGCCTCTGGACCACACACAGCACTGCGTCCTCACACTAGCGTGCCTTGCAG
AACGTGTTCGTCTTCCCAGAGGGCTGCTGGCTTTGGAAACCTAGAGGCATCCACGCCGGA
AGAGAGGACTCACATGGCCCCGGAAGTGAATCACACACTAAGCCGCACAAAACCCCTGCA
CGACCACCCGCCTTTCCAAGTGCAGGCGCTAACCTCACAGAGCAAGGCCGGACCGCACGT
GAGCCCCGGCCAAGAAGGACTCAGCCCTTATCGATAGCAGGCACTTTTTAAGGGAATAAA
AGTTGTGGAAGACAGACCTCAAAACGCTGATAAGTGCGTTCAGGGACTCCATAAGGAAGG
AAAGAAGGACGGGAGATTTCAGAGCACAATTCAGAATGATGACAGAAGGGAAACCAGAAG
CTCCTTATAGTCACTGACGTTTGAATTGGTAAGCAGGAGAAGAATTGCATACTGTGTCTA
CCTGGACATGAGCAGTTTAGACAGTATTTGAAAATTACTTGAAAAGCTGGATTTTCATGA
AGTTCTGGATGAGTGTAAATGTTTCTAGTCAATGATCAAGACTGATGGTTTTCATAAGCA
CCATAAAATGGGTTCTGGAAAGACTTATTGCTGTAGCATCCTGTAATATAACATTCTGGT
AGCAGATTGGGGAAAATGAAGCAGCCCATTGAATAACTGACAAACTCTGCTTGGAGAATT
TTCTGAGGTACAATATCACTGAGTTCCTTTCTTTCTTTCTACGCCAATGGCATTATTATT
CAGGCTGGTAACTCTCCAACTCGGCTGTCATTGAAGTGGTAAACTTGACATGGAGAGTTT
TTATAATCAAGAGTTTGAAAAAGTATTTTAGGGTGATACAGAAAGAACCCAACACAGCAT
AAAGAAAAAAGAAACACACAGACGAAAACCACATCATTTAGATGAATTGCGTGCCTTAAA
ATTGTGGACATTAGAAAATGAAGCATATTGTCTGGATTCCACAGGTAGTTCTAAGTCACC
AAGTGACAAAAACAAAATTAGTTATAAAAAACAAAAGCAAAAAAACCTCCAAGCTGCAGT
AGATTTAATTATGAGGCTAAAACTACCTCATACTTTTTCTTGGGAGAACTAATTCGCTGT
GGTTTATTATAGGGTGTTTTGGTTTTGTTTTTGTTTTTGTTTTAAGCAACTATTTCCATA
TTCCAGATACATCTTTTTTGTCACCTTTACTCTGCTTCAGAATTCCATAAAAGGTGCTCC
TTCCATCTCTTTTATACAGGTTTCTTGTTCATATTGTGAATAGAGAAGTTTCTGAACAAC
TTTTTGGGAACATTTTCTACATATATTCCAAAGCATGTAATATATACATAAAGATGATTT
GTTAAACTGGTCCTTAGTCATTTGTATTATTAAAAATGAAGTTTGGGGAAAAAATTGGAA
AACCGAAAGACATGCAAAAAATAACTTATTTCTTTTTGCATATTTGTATAGCCTTCTAGA
AACAGAAATACCTTTTGCATATTCTTTTACTGTTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1296-1402, + strand, RNAz p=0.810287

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1296-1402, + strand, RNAz p=0.810287

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               117-1776, gnl|bosTau2|chr22 (23408729-23410409)
               

               
               117-1776, gnl|Hg17|chr3 (69303824-69302167)
               

               
               117-1776, gnl|Mm7|chr6 (97376563-97375007)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-1776, gnl|bosTau2|chr22 (23408729-23410409)
               

               
               117-1776, gnl|Hg17|chr3 (69303824-69302167)
               

               
               117-1776, gnl|Mm7|chr6 (97376563-97375007)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               liv (0.292569)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	117-1776, gnl\|bosTau2\|chr22 (23408729-23410409)
	117-1776, gnl\|Hg17\|chr3 (69303824-69302167)
	117-1776, gnl\|Mm7\|chr6 (97376563-97375007)

	liv (0.292569)
	fhi (0.169578)
	lun (0.150489)
	ste (0.135208)
	nmm (0.132802)
	ret (0.128733)
	tra (0.123092)
	ecc (0.115035)
	jca (0.11396)