Non-Coding RNA Search

Ss1.1-rnmm38c_i17.5

Sequence:


               
               TTTTTTTTTTTTTTTAACCAGTGCGGTAAGGGAAGAAAAAAACAAAAAGCCATGCTGTAA
ACTAGTTCTTTTTTTTAAGTTCCTTCCATGAACTATCAACATCAGTATGAATTGATGAAA
CAAATGAAGAAATGTCTAAAGACAACCTCTCAACAGATCGTATCTCAGGTTAAATGCTAA
CTAATTATATCTGTGTTGGGGGTTGTGAAGAGATTGCTGTAAGTATTCGTGTTGCCGACC
CTTCATTACTTTTACAAAAAGACCCATTTTTACCAAAATGGAATAAAAAGTTGGTGGGTA
ATAGCTAATGGCCAAAATGGTTGCAATCATTCATACATGTTAGAAAAATGTTACATGTTG
TAATATATGGAAAAGTGCAATCCATCAACCCTTATAATATACATCAGTGATTTTACATGT
TTTTCTACCACTCGTACCACTTAACCCCTCCCTTCCTATCCTTTGTAAGTATTTCCAGAA
TTAGCAGATTTTAAATCATTCAATAGTAGAAAAAGAGGCATATTTTCATTACTTGACAAC
TTGGGATAGGTGCAATTTATTCCATTGTTGCTAAAATAGAAGAAGCAATTCCATAGGTAC
CATAACCTCTCTTAGGTACCACAAGGTGTCTTTTTACATGGCTCATTTGAATACAGATGT
TCCAAGAAGGGGTTTTCTATTTAAAAATTACCATATCAAAATAAATGTGCCTTATTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTAACCAGTGCGGTAAGGGAAGAAAAAAACAAAAAGCCATGCTGTAA
ACTAGTTCTTTTTTTTAAGTTCCTTCCATGAACTATCAACATCAGTATGAATTGATGAAA
CAAATGAAGAAATGTCTAAAGACAACCTCTCAACAGATCGTATCTCAGGTTAAATGCTAA
CTAATTATATCTGTGTTGGGGGTTGTGAAGAGATTGCTGTAAGTATTCGTGTTGCCGACC
CTTCATTACTTTTACAAAAAGACCCATTTTTACCAAAATGGAATAAAAAGTTGGTGGGTA
ATAGCTAATGGCCAAAATGGTTGCAATCATTCATACATGTTAGAAAAATGTTACATGTTG
TAATATATGGAAAAGTGCAATCCATCAACCCTTATAATATACATCAGTGATTTTACATGT
TTTTCTACCACTCGTACCACTTAACCCCTCCCTTCCTATCCTTTGTAAGTATTTCCAGAA
TTAGCAGATTTTAAATCATTCAATAGTAGAAAAAGAGGCATATTTTCATTACTTGACAAC
TTGGGATAGGTGCAATTTATTCCATTGTTGCTAAAATAGAAGAAGCAATTCCATAGGTAC
CATAACCTCTCTTAGGTACCACAAGGTGTCTTTTTACATGGCTCATTTGAATACAGATGT
TCCAAGAAGGGGTTTTCTATTTAAAAATTACCATATCAAAATAAATGTGCCTTATTTTTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-718, gnl|bosTau2|chr7 (68644470-68643776)
               

               
               4-718, gnl|Hg17|chr5 (109230717-109231443)
               

               
               4-718, gnl|Mm7|chr17 (62961747-62962453)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-718, gnl|bosTau2|chr7 (68644470-68643776)
               

               
               4-718, gnl|Hg17|chr5 (109230717-109231443)
               

               
               4-718, gnl|Mm7|chr17 (62961747-62962453)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)

	4-718, gnl\|bosTau2\|chr7 (68644470-68643776)
	4-718, gnl\|Hg17\|chr5 (109230717-109231443)
	4-718, gnl\|Mm7\|chr17 (62961747-62962453)