Ss1.1-rnmm38c_j12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCAGAGCCGGCACCTGGCTTCACTTAGCTCCCTCT------------CACATCTGTCTG CCTCGGCCCCGCCCAACCCATCCATCTCCACGGAGAAATTCTGAGGCCAGACTTGCTCTC TGGGTCCCCTGTTGTCAGTTTTCTCAGTGGGGGGCCTTGGAGAGGGTCAGGGCCTCACCA AATACCCTCCCTTCCCAATTCTAAAGCTGAGTCAGAGGAAGGGCTGGGGCCCACACCGGG TGCTCCACCGTGCTTCCTCTCTGGGCAGGAAGCCGAGAAGGGGGGGCTAGGATACCTTCC TTGACCTCCCCGCACGACCCCCCAGAACAATGCCCCAGGCCAGGCAGGGCTTCCTGGTCC CTCCCTTGGGATCCCCCCACCAATGATCTAATCGTTGGTGCTCTCCTAAGGGCCTGAGGT TTTCTGGTTAGAGAAGATAGGAGTTTGGGGCAGGGCCAGGGAGGTGACATGCCCTCTGGT TGCTTCCGACCGGTCTGCCTGAGGCTTTGCGGATCAAGTTGGAATTGGATGGTGAGAGTC ATATCCTGGAGCTGCTACAGACTAGGGAACTTGTCTCAGGCCGCCCGACCCTGGTGTGGT ACCAGCCTGATGGCACCCGGGTGGTCAGTGAGGGACACACTCTGGAGAATTGCTGCTACC AGGGAAGAGTGCAAGGCCACACCGATTCCTAGGTCTCTGTCTGCACCTGCTCCGGGCTCA GGGGCTTGGTGATTCTGTCCCCAGAGAGAAGCTACGCCCTGGAGCAGAGGCCCGGGGGTC TTCAGGGTCCTCCTGTGATCTCCCGGATCCAAGACCTCCTCCTGCCAGGCCACACTTGTG CCCTGAGCTGGCCTGCCCCTGTGCCCATTCAGGCACCACCAGAGCACCCCACGGGACAGC ATCACATTCGCAGGTGGAGGCGGGACGTGGTGACAGAGACCAAAGTTGTTGAGCTGGTGA TCGTGGCTGATCACTCTGAGGTCCGGAGGTACCGGGACTTCCAGCACCTGCTGAACCGTA CCTTGGAAGTGGCCCTCCTCTTGGACACATTCTTCCGGCCTCTGAATGTCCGGGTGGCCC TAGTGGGCCTGGAGGCCTGGACCCAGCACGACCTGATAGAGATAAGTCAGGACCCAGGTC TCACACTAGACAGCTTCCTCCACTGGCGCCAGACAGACTTGCTGCCTCGGTTGCCCCACG ACAGTGCCCAGCTGGTGACGTAAGACACACACACCCCCGCCCCCCTCGCCTCCCCAGGCT CAGCGAGCAGGGCCTGGCTCTGCCCCGGCCTGGCCAATTTCACACCCCGACTCCCCTACC TGAGGCCCTGAAGCTCTGGCCACTTTGGCTTTGGGCCCTAACCTTTGACCTCTCCATCCC ACAGCGCTACGTCATTCTCTGGGCCCATGGTGGGCATGGCCATTCAGAACTCCATCTGTT CTCCTGACTTCTCAGGAGGCGTGAACATGGTGAGCTATTTCCGTGTCTCCTCCTCATCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCAGAGCCGGCACCTGGCTTCACTTAGCTCCCTCT------------CACATCTGTCTG CCTCGGCCCCGCCCAACCCATCCATCTCCACGGAGAAATTCTGAGGCCAGACTTGCTCTC TGGGTCCCCTGTTGTCAGTTTTCTCAGTGGGGGGCCTTGGAGAGGGTCAGGGCCTCACCA AATACCCTCCCTTCCCAATTCTAAAGCTGAGTCAGAGGAAGGGCTGGGGCCCACACCGGG TGCTCCACCGTGCTTCCTCTCTGGGCAGGAAGCCGAGAAGGGGGGGCTAGGATACCTTCC TTGACCTCCCCGCACGACCCCCCAGAACAATGCCCCAGGCCAGGCAGGGCTTCCTGGTCC CTCCCTTGGGATCCCCCCACCAATGATCTAATCGTTGGTGCTCTCCTAAGGGCCTGAGGT TTTCTGGTTAGAGAAGATAGGAGTTTGGGGCAGGGCCAGGGAGGTGACATGCCCTCTGGT TGCTTCCGACCGGTCTGCCTGAGGCTTTGCGGATCAAGTTGGAATTGGATGGTGAGAGTC ATATCCTGGAGCTGCTACAGACTAGGGAACTTGTCTCAGGCCGCCCGACCCTGGTGTGGT ACCAGCCTGATGGCACCCGGGTGGTCAGTGAGGGACACACTCTGGAGAATTGCTGCTACC AGGGAAGAGTGCAAGGCCACACCGATTCCTAGGTCTCTGTCTGCACCTGCTCCGGGCTCA GGGGCTTGGTGATTCTGTCCCCAGAGAGAAGCTACGCCCTGGAGCAGAGGCCCGGGGGTC TTCAGGGTCCTCCTGTGATCTCCCGGATCCAAGACCTCCTCCTGCCAGGCCACACTTGTG CCCTGAGCTGGCCTGCCCCTGTGCCCATTCAGGCACCACCAGAGCACCCCACGGGACAGC ATCACATTCGCAGGTGGAGGCGGGACGTGGTGACAGAGACCAAAGTTGTTGAGCTGGTGA TCGTGGCTGATCACTCTGAGGTCCGGAGGTACCGGGACTTCCAGCACCTGCTGAACCGTA CCTTGGAAGTGGCCCTCCTCTTGGACACATTCTTCCGGCCTCTGAATGTCCGGGTGGCCC TAGTGGGCCTGGAGGCCTGGACCCAGCACGACCTGATAGAGATAAGTCAGGACCCAGGTC TCACACTAGACAGCTTCCTCCACTGGCGCCAGACAGACTTGCTGCCTCGGTTGCCCCACG ACAGTGCCCAGCTGGTGACGTAAGACACACACACCCCCGCCCCCCTCGCCTCCCCAGGCT CAGCGAGCAGGGCCTGGCTCTGCCCCGGCCTGGCCAATTTCACACCCCGACTCCCCTACC TGAGGCCCTGAAGCTCTGGCCACTTTGGCTTTGGGCCCTAACCTTTGACCTCTCCATCCC ACAGCGCTACGTCATTCTCTGGGCCCATGGTGGGCATGGCCATTCAGAACTCCATCTGTT CTCCTGACTTCTCAGGAGGCGTGAACATGGTGAGCTATTTCCGTGTCTCCTCCTCATCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 178-453, - strand, RNAz p=0.995924 | |
| 733-891, + strand, RNAz p=0.772805 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 178-453, - strand, RNAz p=0.995924 | |
| 733-891, + strand, RNAz p=0.772805 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 37-557, gnl|bosTau2|chr3 (9143022-9143531) | |
| 37-557, gnl|Hg17|chr1 (151838518-151839046) | |
| 37-557, gnl|Mm7|chr3 (89475042-89474529) | |
| 694-913, gnl|bosTau2|chr3 (9144368-9144588) | |
| 694-913, gnl|canFam2|chr7 (45413560-45413251) | |
| 694-913, gnl|dasNov1|scaffold_56035 (10591-10897) | |
| 694-913, gnl|echTel1|scaffold_106634 (194-510) | |
| 694-913, gnl|hg17|chr1 (151839780-151840079) | |
| 694-913, gnl|Hg17|chr1 (151839850-151840066) | |
| 694-913, gnl|loxAfr1|scaffold_12583 (58175-57872) | |
| 694-913, gnl|mm7|chr3 (89473813-89473530) | |
| 694-913, gnl|Mm7|chr3 (89473747-89473530) | |
| 694-913, gnl|monDom2|scaffold_59 (2739619-2739337) | |
| 694-913, gnl|panTro1|chr1 (133829205-133829508) | |
| 694-913, gnl|rheMac2|chr1 (133599048-133599351) | |
| 694-913, gnl|rn3|chr2 (181484628-181484339) | |
| 1038-1207, gnl|bosTau2|chr3 (9145660-9145829) | |
| 1038-1207, gnl|canFam2|chr7 (45411761-45411566) | |
| 1038-1207, gnl|danRer3|chrUn (26761421-26761622) | |
| 1038-1207, gnl|dasNov1|scaffold_56035 (12022-12207) | |
| 1038-1207, gnl|echTel1|scaffold_265060 (4591-4396) | |
| 1038-1207, gnl|fr1|chrUn (259509415-259509221) | |
| 1038-1207, gnl|hg17|chr1 (151841619-151841816) | |
| 1038-1207, gnl|Hg17|chr1 (151841629-151841798) | |
| 1038-1207, gnl|loxAfr1|scaffold_3179 (47905-47738) | |
| 1038-1207, gnl|mm7|chr3 (89472336-89472141) | |
| 1038-1207, gnl|Mm7|chr3 (89472326-89472157) | |
| 1038-1207, gnl|monDom2|scaffold_59 (2738550-2738347) | |
| 1038-1207, gnl|oryCun1|scaffold_146135 (6268-6074) | |
| 1038-1207, gnl|panTro1|chr1 (133831059-133831256) | |
| 1038-1207, gnl|rheMac2|chr1 (133600929-133601124) | |
| 1038-1207, gnl|rn3|chr2 (181483171-181482976) | |
| 1038-1207, gnl|tetNig1|chrUn_random (46977908-46978100) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-557, gnl|bosTau2|chr3 (9143022-9143531) | |
| 37-557, gnl|Hg17|chr1 (151838518-151839046) | |
| 37-557, gnl|Mm7|chr3 (89475042-89474529) | |
| 694-913, gnl|bosTau2|chr3 (9144368-9144588) | |
| 694-913, gnl|canFam2|chr7 (45413560-45413251) | |
| 694-913, gnl|dasNov1|scaffold_56035 (10591-10897) | |
| 694-913, gnl|echTel1|scaffold_106634 (194-510) | |
| 694-913, gnl|hg17|chr1 (151839780-151840079) | |
| 694-913, gnl|Hg17|chr1 (151839850-151840066) | |
| 694-913, gnl|loxAfr1|scaffold_12583 (58175-57872) | |
| 694-913, gnl|mm7|chr3 (89473813-89473530) | |
| 694-913, gnl|Mm7|chr3 (89473747-89473530) | |
| 694-913, gnl|monDom2|scaffold_59 (2739619-2739337) | |
| 694-913, gnl|panTro1|chr1 (133829205-133829508) | |
| 694-913, gnl|rheMac2|chr1 (133599048-133599351) | |
| 694-913, gnl|rn3|chr2 (181484628-181484339) | |
| 1038-1207, gnl|bosTau2|chr3 (9145660-9145829) | |
| 1038-1207, gnl|canFam2|chr7 (45411761-45411566) | |
| 1038-1207, gnl|danRer3|chrUn (26761421-26761622) | |
| 1038-1207, gnl|dasNov1|scaffold_56035 (12022-12207) | |
| 1038-1207, gnl|echTel1|scaffold_265060 (4591-4396) | |
| 1038-1207, gnl|fr1|chrUn (259509415-259509221) | |
| 1038-1207, gnl|hg17|chr1 (151841619-151841816) | |
| 1038-1207, gnl|Hg17|chr1 (151841629-151841798) | |
| 1038-1207, gnl|loxAfr1|scaffold_3179 (47905-47738) | |
| 1038-1207, gnl|mm7|chr3 (89472336-89472141) | |
| 1038-1207, gnl|Mm7|chr3 (89472326-89472157) | |
| 1038-1207, gnl|monDom2|scaffold_59 (2738550-2738347) | |
| 1038-1207, gnl|oryCun1|scaffold_146135 (6268-6074) | |
| 1038-1207, gnl|panTro1|chr1 (133831059-133831256) | |
| 1038-1207, gnl|rheMac2|chr1 (133600929-133601124) | |
| 1038-1207, gnl|rn3|chr2 (181483171-181482976) | |
| 1038-1207, gnl|tetNig1|chrUn_random (46977908-46978100) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |