Non-Coding RNA Search

Ss1.1-rnmm38c_n5.5

Sequence:


               
               CAAGACCATGCAACACCAAGCGGAGGCCAGGCCAGAGTCGGGGTCCATGACACCCGCCCC
CGCTACGACCCCTACCCCGGTCTGGGCTGCGGCTGTCGGTAACGTTGCAGAACTTACTGG
CAGTCTCCAAGAATATTATTGTGAGCTATGTATGGAAAAGTCCCAGGAAGTTAAACCTTT
TATATTACACATACTCCAAGAAGTAGATGAAGAAATTGGAAAGGGATTGGAAGGAATCAC
AGTAAACATTGCTGGTAATAGTCGCTTAATGATGGTAGAAAGAATAACAGGTGAAGATTT
TTGGATTCTTTGCAGAATTTTAAAGAATAATCCATATATTAATGGTTTGGATGTTAGATA
TAACCGGATAAGTGATGTTGGTGCATACTATGCTGCAAAACTGCTTCAGACTTCACTTTG
GAGACACCCAAGCTGAAATGCTGCTTTATGGTTGTATTTCATTTGAGAAAGACAGTGTGG
TCCACCAGTCAGAATAGGTATCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGACCATGCAACACCAAGCGGAGGCCAGGCCAGAGTCGGGGTCCATGACACCCGCCCC
CGCTACGACCCCTACCCCGGTCTGGGCTGCGGCTGTCGGTAACGTTGCAGAACTTACTGG
CAGTCTCCAAGAATATTATTGTGAGCTATGTATGGAAAAGTCCCAGGAAGTTAAACCTTT
TATATTACACATACTCCAAGAAGTAGATGAAGAAATTGGAAAGGGATTGGAAGGAATCAC
AGTAAACATTGCTGGTAATAGTCGCTTAATGATGGTAGAAAGAATAACAGGTGAAGATTT
TTGGATTCTTTGCAGAATTTTAAAGAATAATCCATATATTAATGGTTTGGATGTTAGATA
TAACCGGATAAGTGATGTTGGTGCATACTATGCTGCAAAACTGCTTCAGACTTCACTTTG
GAGACACCCAAGCTGAAATGCTGCTTTATGGTTGTATTTCATTTGAGAAAGACAGTGTGG
TCCACCAGTCAGAATAGGTATCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27689539|ref|XP_215531.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27689539|ref|XP_215531.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               101-233, gnl|bosTau2|chr1 (63214425-63214558)
               

               
               101-233, gnl|Hg17|chr3 (171009236-171009109)
               

               
               101-233, gnl|Mm7|chr3 (30457285-30457152)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-233, gnl|bosTau2|chr1 (63214425-63214558)
               

               
               101-233, gnl|Hg17|chr3 (171009236-171009109)
               

               
               101-233, gnl|Mm7|chr3 (30457285-30457152)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.415628)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               nmm (0.132802)

	101-233, gnl\|bosTau2\|chr1 (63214425-63214558)
	101-233, gnl\|Hg17\|chr3 (171009236-171009109)
	101-233, gnl\|Mm7\|chr3 (30457285-30457152)