Ss1.1-rnmm38c_p12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCCAGTCGGCCACTCAGCGCCCGGAGCGAGCCCAGTGACAAAGGAAGTCGGGCACCCC TGTCAAGGAAGCCCTCGGTCCCCAAGATGACCACTCGAGGTTCATCTGGGTCAGCTGGTA GTCGGCCAGGAGGGTCAGCAGCCCCACCCGGCTCCCCTGTCTACCTCGACCTGGCCTACC TGCCCAGCGGGGGCAGTGCCCGCCTGGTGGACGAGGAGTTCTTCCGGCGGGTGCGAGCGC TCTGCTACGTCATCAGCGGCCAGGACCAGCACAAGGAAGAGGGCATGCGGGCCGTCTTGG ATGCGCTCCTGGCTGGCAAGCAGCAATGGGACCGGGACCTCCAGGTGACACTGATCCCCA CCTTTGATTCGGTGGCGATGCACGAGTGGTACGAGGAGACGCACGCCCGGCACCAGGCGC TGGGCATCACAGTGTTGGGCAGCAACAGCACCGTGTCCATGCAGGACGAGGCTTTCCCGG CCTGCAAGGTGGAGTTCTAGCCCCGCCCCCTCTGCCCAGCATCAGCCACTGTCCTGAGAT TCACCCATGTCTGAAATAAACCAGGTACTCCGCTCAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCCAGTCGGCCACTCAGCGCCCGGAGCGAGCCCAGTGACAAAGGAAGTCGGGCACCCC TGTCAAGGAAGCCCTCGGTCCCCAAGATGACCACTCGAGGTTCATCTGGGTCAGCTGGTA GTCGGCCAGGAGGGTCAGCAGCCCCACCCGGCTCCCCTGTCTACCTCGACCTGGCCTACC TGCCCAGCGGGGGCAGTGCCCGCCTGGTGGACGAGGAGTTCTTCCGGCGGGTGCGAGCGC TCTGCTACGTCATCAGCGGCCAGGACCAGCACAAGGAAGAGGGCATGCGGGCCGTCTTGG ATGCGCTCCTGGCTGGCAAGCAGCAATGGGACCGGGACCTCCAGGTGACACTGATCCCCA CCTTTGATTCGGTGGCGATGCACGAGTGGTACGAGGAGACGCACGCCCGGCACCAGGCGC TGGGCATCACAGTGTTGGGCAGCAACAGCACCGTGTCCATGCAGGACGAGGCTTTCCCGG CCTGCAAGGTGGAGTTCTAGCCCCGCCCCCTCTGCCCAGCATCAGCCACTGTCCTGAGAT TCACCCATGTCTGAAATAAACCAGGTACTCCGCTCAAAAAAAAAAAAA |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-109, gnl|bosTau2|chr7 (4709503-4709395) | |
| 1-109, gnl|canFam2|chr20 (48157062-48156909) | |
| 1-109, gnl|echTel1|scaffold_254130 (6393-6267) | |
| 1-109, gnl|hg17|chr19 (17699869-17700022) | |
| 1-109, gnl|Hg17|chr19 (17699874-17699982) | |
| 1-109, gnl|loxAfr1|scaffold_110381 (550-686) | |
| 1-109, gnl|mm7|chr8 (69369372-69369464) | |
| 1-109, gnl|monDom2|scaffold_209 (452595-452737) | |
| 1-109, gnl|oryCun1|scaffold_69532 (6823-6900) | |
| 1-109, gnl|panTro1|chr20 (18690687-18690840) | |
| 1-109, gnl|rheMac2|chr19 (17285067-17285220) | |
| 1-109, gnl|rn3|chr16 (19019782-19019648) | |
| 341-498, gnl|bosTau2|chr21 (34382442-34382599) | |
| 341-498, gnl|canFam2|chr30 (13373598-13373699) | |
| 341-498, gnl|danRer3|chr7 (43742831-43742730) | |
| 341-498, gnl|dasNov1|scaffold_2110 (149408-149307) | |
| 341-498, gnl|echTel1|scaffold_322287 (245514-245615) | |
| 341-498, gnl|fr1|chrUn (23993840-23993744) | |
| 341-498, gnl|galGal2|chr10 (20744081-20743980) | |
| 341-498, gnl|hg17|chr15 (41609553-41609654) | |
| 341-498, gnl|Hg17|chr15 (41609555-41609712) | |
| 341-498, gnl|loxAfr1|scaffold_7027 (19404-19302) | |
| 341-498, gnl|mm7|chr2 (121048775-121048876) | |
| 341-498, gnl|Mm7|chr2 (121048777-121048934) | |
| 341-498, gnl|monDom2|scaffold_53 (10448331-10448218) | |
| 341-498, gnl|oryCun1|scaffold_214759 (7878-7979) | |
| 341-498, gnl|panTro1|chr16 (41611197-41611298) | |
| 341-498, gnl|rheMac2|chr7 (21968739-21968840) | |
| 341-498, gnl|rn3|chr3 (108008550-108008651) | |
| 341-498, gnl|tetNig1|chrUn_random (97940356-97940260) | |
| 341-498, gnl|xenTro1|scaffold_358 (964628-964527) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-109, gnl|bosTau2|chr7 (4709503-4709395) | |
| 1-109, gnl|canFam2|chr20 (48157062-48156909) | |
| 1-109, gnl|echTel1|scaffold_254130 (6393-6267) | |
| 1-109, gnl|hg17|chr19 (17699869-17700022) | |
| 1-109, gnl|Hg17|chr19 (17699874-17699982) | |
| 1-109, gnl|loxAfr1|scaffold_110381 (550-686) | |
| 1-109, gnl|mm7|chr8 (69369372-69369464) | |
| 1-109, gnl|monDom2|scaffold_209 (452595-452737) | |
| 1-109, gnl|oryCun1|scaffold_69532 (6823-6900) | |
| 1-109, gnl|panTro1|chr20 (18690687-18690840) | |
| 1-109, gnl|rheMac2|chr19 (17285067-17285220) | |
| 1-109, gnl|rn3|chr16 (19019782-19019648) | |
| 341-498, gnl|bosTau2|chr21 (34382442-34382599) | |
| 341-498, gnl|canFam2|chr30 (13373598-13373699) | |
| 341-498, gnl|danRer3|chr7 (43742831-43742730) | |
| 341-498, gnl|dasNov1|scaffold_2110 (149408-149307) | |
| 341-498, gnl|echTel1|scaffold_322287 (245514-245615) | |
| 341-498, gnl|fr1|chrUn (23993840-23993744) | |
| 341-498, gnl|galGal2|chr10 (20744081-20743980) | |
| 341-498, gnl|hg17|chr15 (41609553-41609654) | |
| 341-498, gnl|Hg17|chr15 (41609555-41609712) | |
| 341-498, gnl|loxAfr1|scaffold_7027 (19404-19302) | |
| 341-498, gnl|mm7|chr2 (121048775-121048876) | |
| 341-498, gnl|Mm7|chr2 (121048777-121048934) | |
| 341-498, gnl|monDom2|scaffold_53 (10448331-10448218) | |
| 341-498, gnl|oryCun1|scaffold_214759 (7878-7979) | |
| 341-498, gnl|panTro1|chr16 (41611197-41611298) | |
| 341-498, gnl|rheMac2|chr7 (21968739-21968840) | |
| 341-498, gnl|rn3|chr3 (108008550-108008651) | |
| 341-498, gnl|tetNig1|chrUn_random (97940356-97940260) | |
| 341-498, gnl|xenTro1|scaffold_358 (964628-964527) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pty (0.142714) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| ecc (0.115035) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.142714) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| ecc (0.115035) |